This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CCG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300333 (1 seq.)
>SRA1029303
SRR035087.105786
454 Sequencing (SRP001808)
368
294
-
Arg
CCG
[SRA]
Identical group No.300674 (1 seq.)
>SRA1031393
SRR035087.423226
454 Sequencing (SRP001808)
437
364
-
Arg
CCG
[SRA]
Identical group No.300760 (1 seq.)
>SRA1032007
SRR035087.530003
454 Sequencing (SRP001808)
278
353
+
Arg
CCG
[SRA]
Identical group No.300806 (1 seq.)
>SRA1032283
SRR035087.595028
454 Sequencing (SRP001808)
423
499
+
Arg
CCG
[SRA]
Identical group No.484060 (1 seq.)
>SRA1028917
SRR035087.36956
454 Sequencing (SRP001808)
136
211
+
Arg
CCG
[SRA]
Identical group No.484183 (2 seq.)
>SRA1029668
SRR035087.160949
454 Sequencing (SRP001808)
30
102
+
Arg
CCG
[SRA]
>SRA1031909
SRR035087.510042
454 Sequencing (SRP001808)
30
102
+
Arg
CCG
[SRA]
Identical group No.484197 (1 seq.)
>SRA1029757
SRR035087.176776
454 Sequencing (SRP001808)
117
42
-
Arg
CCG
[SRA]
Identical group No.484468 (1 seq.)
>SRA1031628
SRR035087.462152
454 Sequencing (SRP001808)
336
261
-
Arg
CCG
[SRA]
Identical group No.672469 (1 seq.)
>SRA1030636
SRR035087.308143
454 Sequencing (SRP001808)
308
236
-
Arg
CCG
[SRA]
Identical group No.672505 (1 seq.)
>SRA1031000
SRR035087.358616
454 Sequencing (SRP001808)
402
330
-
Arg
CCG
[SRA]
Identical group No.672506 (1 seq.)
>SRA1031005
SRR035087.359322
454 Sequencing (SRP001808)
25
100
+
Arg
CCG
[SRA]
Identical group No.672629 (1 seq.)
>SRA1032106
SRR035087.553347
454 Sequencing (SRP001808)
312
239
-
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK