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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CTA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235644 (1 seq.)
>SRA1029260
SRR035087.98937
454 Sequencing (SRP001808)
376
297
-
Sup
CTA
[SRA]
Identical group No.244535 (1 seq.)
>SRA1031714
SRR035087.476124
454 Sequencing (SRP001808)
316
393
+
Sup
CTA
[SRA]
Identical group No.300376 (1 seq.)
>SRA1029624
SRR035087.152951
454 Sequencing (SRP001808)
507
431
-
Sup
CTA
[SRA]
Identical group No.300649 (2 seq.)
>WENV170611950
FUWD012466918
[FUWD] metagenome; unknown
206
130
-
Sup
CTA
[ENA]
¢þ
>SRA1031262
SRR035087.401970
454 Sequencing (SRP001808)
462
386
-
Sup
CTA
[SRA]
Identical group No.484119 (1 seq.)
>SRA1029268
SRR035087.100321
454 Sequencing (SRP001808)
117
191
+
Sup
CTA
[SRA]
Identical group No.484236 (1 seq.)
>SRA1030002
SRR035087.214613
454 Sequencing (SRP001808)
167
94
-
Sup
CTA
[SRA]
Identical group No.672245 (2 seq.)
>SRA1018971
SRR035082.379004
454 Sequencing (SRP001803)
254
328
+
Sup
CTA
[SRA]
>SRA1028851
SRR035087.22194
454 Sequencing (SRP001808)
247
321
+
Sup
CTA
[SRA]
Identical group No.672431 (1 seq.)
>SRA1030297
SRR035087.258015
454 Sequencing (SRP001808)
89
163
+
Sup
CTA
[SRA]
Identical group No.672813 (1 seq.)
>SRA1029651
SRR035087.157535
454 Sequencing (SRP001808)
234
306
+
Stop
CTA
[SRA]
Identical group No.787994 (1 seq.)
>SRA1028808
SRR035087.12428
454 Sequencing (SRP001808)
124
197
+
Sup
CTA
[SRA]
Identical group No.788159 (1 seq.)
>SRA1031171
SRR035087.384669
454 Sequencing (SRP001808)
136
64
-
Sup
CTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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