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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CTG
HIT:
37 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244559 (1 seq.)
>SRA1032345
SRR035087.609717
454 Sequencing (SRP001808)
208
134
-
Gln
CTG
[SRA]
Identical group No.484141 (1 seq.)
>SRA1029411
SRR035087.122863
454 Sequencing (SRP001808)
293
367
+
Gln
CTG
[SRA]
Identical group No.484179 (1 seq.)
>SRA1029641
SRR035087.155151
454 Sequencing (SRP001808)
159
233
+
Gln
CTG
[SRA]
Identical group No.484245 (1 seq.)
>SRA1030060
SRR035087.222154
454 Sequencing (SRP001808)
123
195
+
Gln
CTG
[SRA]
Identical group No.484273 (1 seq.)
>SRA1030244
SRR035087.248820
454 Sequencing (SRP001808)
303
378
+
Gln
CTG
[SRA]
Identical group No.484294 (1 seq.)
>SRA1030414
SRR035087.277052
454 Sequencing (SRP001808)
102
174
+
Gln
CTG
[SRA]
Identical group No.484355 (1 seq.)
>SRA1030816
SRR035087.333819
454 Sequencing (SRP001808)
6
78
+
Gln
CTG
[SRA]
Identical group No.484511 (1 seq.)
>SRA1031936
SRR035087.515647
454 Sequencing (SRP001808)
268
344
+
Gln
CTG
[SRA]
Identical group No.672318 (2 seq.)
>SRA1029417
SRR035087.124473
454 Sequencing (SRP001808)
244
318
+
Gln
CTG
[SRA]
>SRA1029893
SRR035087.197618
454 Sequencing (SRP001808)
244
318
+
Gln
CTG
[SRA]
Identical group No.672322 (1 seq.)
>SRA1029454
SRR035087.129341
454 Sequencing (SRP001808)
77
151
+
Gln
CTG
[SRA]
Identical group No.672356 (1 seq.)
>SRA1029694
SRR035087.165908
454 Sequencing (SRP001808)
268
341
+
Gln
CTG
[SRA]
Identical group No.672357 (1 seq.)
>SRA1029700
SRR035087.166974
454 Sequencing (SRP001808)
168
94
-
Gln
CTG
[SRA]
Identical group No.672399 (1 seq.)
>SRA1030070
SRR035087.224274
454 Sequencing (SRP001808)
385
456
+
Gln
CTG
[SRA]
Identical group No.672438 (1 seq.)
>SRA1030368
SRR035087.268630
454 Sequencing (SRP001808)
12
86
+
Gln
CTG
[SRA]
Identical group No.672492 (1 seq.)
>SRA1030884
SRR035087.342535
454 Sequencing (SRP001808)
176
247
+
Gln
CTG
[SRA]
Identical group No.672566 (1 seq.)
>SRA1031446
SRR035087.431589
454 Sequencing (SRP001808)
413
339
-
Gln
CTG
[SRA]
Identical group No.672587 (2 seq.)
>SRA1031659
SRR035087.466697
454 Sequencing (SRP001808)
272
198
-
Gln
CTG
[SRA]
>SRA1031698
SRR035087.473440
454 Sequencing (SRP001808)
272
198
-
Gln
CTG
[SRA]
Identical group No.672630 (1 seq.)
>SRA1032112
SRR035087.554039
454 Sequencing (SRP001808)
211
137
-
Gln
CTG
[SRA]
Identical group No.672659 (1 seq.)
>SRA1032347
SRR035087.609800
454 Sequencing (SRP001808)
277
203
-
Gln
CTG
[SRA]
Identical group No.672792 (2 seq.)
>SRA1030773
SRR035087.329975
454 Sequencing (SRP001808)
249
177
-
Gln
CTG
[SRA]
>SRA1031111
SRR035087.375779
454 Sequencing (SRP001808)
249
177
-
Gln
CTG
[SRA]
Identical group No.787996 (1 seq.)
>SRA1028830
SRR035087.16304
454 Sequencing (SRP001808)
98
26
-
Gln
CTG
[SRA]
Identical group No.788028 (1 seq.)
>SRA1029189
SRR035087.89785
454 Sequencing (SRP001808)
414
340
-
Gln
CTG
[SRA]
Identical group No.788047 (1 seq.)
>SRA1029430
SRR035087.126175
454 Sequencing (SRP001808)
11
83
+
Gln
CTG
[SRA]
Identical group No.788067 (1 seq.)
>SRA1029685
SRR035087.163701
454 Sequencing (SRP001808)
134
207
+
Gln
CTG
[SRA]
Identical group No.788113 (1 seq.)
>SRA1030424
SRR035087.278511
454 Sequencing (SRP001808)
225
151
-
Gln
CTG
[SRA]
Identical group No.788119 (1 seq.)
>SRA1030532
SRR035087.291157
454 Sequencing (SRP001808)
120
193
+
Gln
CTG
[SRA]
Identical group No.788125 (1 seq.)
>SRA1030658
SRR035087.310476
454 Sequencing (SRP001808)
142
215
+
Gln
CTG
[SRA]
Identical group No.788139 (1 seq.)
>SRA1030946
SRR035087.353014
454 Sequencing (SRP001808)
195
122
-
Gln
CTG
[SRA]
Identical group No.788166 (1 seq.)
>SRA1031254
SRR035087.401064
454 Sequencing (SRP001808)
142
215
+
Gln
CTG
[SRA]
Identical group No.788186 (1 seq.)
>SRA1031629
SRR035087.462212
454 Sequencing (SRP001808)
242
315
+
Gln
CTG
[SRA]
Identical group No.788197 (2 seq.)
>SRA1031834
SRR035087.496688
454 Sequencing (SRP001808)
177
248
+
Gln
CTG
[SRA]
>SRA1032081
SRR035087.548281
454 Sequencing (SRP001808)
167
96
-
Gln
CTG
[SRA]
Identical group No.788211 (1 seq.)
>SRA1032031
SRR035087.537341
454 Sequencing (SRP001808)
124
196
+
Gln
CTG
[SRA]
Identical group No.788220 (1 seq.)
>SRA1032118
SRR035087.555994
454 Sequencing (SRP001808)
272
343
+
Gln
CTG
[SRA]
Identical group No.788223 (1 seq.)
>SRA1032161
SRR035087.565523
454 Sequencing (SRP001808)
198
125
-
Gln
CTG
[SRA]
Identical group No.788233 (1 seq.)
>SRA1032285
SRR035087.595550
454 Sequencing (SRP001808)
313
240
-
Gln
CTG
[SRA]
Identical group No.788235 (1 seq.)
>SRA1032321
SRR035087.604731
454 Sequencing (SRP001808)
17
90
+
Gln
CTG
[SRA]
Identical group No.788322 (1 seq.)
>SRA1028954
SRR035087.45963
454 Sequencing (SRP001808)
114
187
+
Gln
CTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK