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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GAA
HIT:
39 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90584 (1 seq.)
>SRA1031271
SRR035087.403704
454 Sequencing (SRP001808)
497
413
-
Phe
GAA
[SRA]
Identical group No.186114 (1 seq.)
>SRA1031451
SRR035087.432238
454 Sequencing (SRP001808)
218
133
-
Phe
GAA
[SRA]
Identical group No.244608 (1 seq.)
>SRA1030127
SRR035087.230735
454 Sequencing (SRP001808)
292
215
-
Phe
GAA
[SRA]
Identical group No.244611 (1 seq.)
>SRA1031753
SRR035087.482190
454 Sequencing (SRP001808)
59
136
+
Phe
GAA
[SRA]
Identical group No.300391 (1 seq.)
>SRA1029735
SRR035087.172779
454 Sequencing (SRP001808)
88
15
-
Phe
GAA
[SRA]
Identical group No.300589 (1 seq.)
>SRA1030924
SRR035087.349672
454 Sequencing (SRP001808)
279
355
+
Phe
GAA
[SRA]
Identical group No.484073 (1 seq.)
>SRA1029003
SRR035087.57697
454 Sequencing (SRP001808)
125
52
-
Phe
GAA
[SRA]
Identical group No.484078 (1 seq.)
>SRA1029024
SRR035087.60356
454 Sequencing (SRP001808)
201
126
-
Phe
GAA
[SRA]
Identical group No.484106 (1 seq.)
>SRA1029177
SRR035087.87655
454 Sequencing (SRP001808)
165
90
-
Phe
GAA
[SRA]
Identical group No.484131 (1 seq.)
>SRA1029342
SRR035087.111697
454 Sequencing (SRP001808)
157
232
+
Phe
GAA
[SRA]
Identical group No.484138 (1 seq.)
>SRA1029405
SRR035087.122282
454 Sequencing (SRP001808)
275
200
-
Phe
GAA
[SRA]
Identical group No.484170 (1 seq.)
>SRA1029575
SRR035087.148133
454 Sequencing (SRP001808)
131
203
+
Phe
GAA
[SRA]
Identical group No.484254 (1 seq.)
>SRA1030126
SRR035087.230735
454 Sequencing (SRP001808)
378
303
-
Phe
GAA
[SRA]
Identical group No.484256 (1 seq.)
>SRA1030135
SRR035087.232094
454 Sequencing (SRP001808)
252
324
+
Phe
GAA
[SRA]
Identical group No.484287 (1 seq.)
>SRA1030356
SRR035087.266689
454 Sequencing (SRP001808)
213
285
+
Phe
GAA
[SRA]
Identical group No.484301 (1 seq.)
>SRA1030438
SRR035087.279654
454 Sequencing (SRP001808)
102
26
-
Phe
GAA
[SRA]
Identical group No.484305 (1 seq.)
>SRA1030460
SRR035087.282017
454 Sequencing (SRP001808)
31
103
+
Phe
GAA
[SRA]
Identical group No.484307 (1 seq.)
>SRA1030498
SRR035087.288051
454 Sequencing (SRP001808)
103
178
+
Phe
GAA
[SRA]
Identical group No.484328 (1 seq.)
>SRA1030622
SRR035087.306127
454 Sequencing (SRP001808)
333
407
+
Phe
GAA
[SRA]
Identical group No.484353 (1 seq.)
>SRA1030812
SRR035087.333545
454 Sequencing (SRP001808)
332
257
-
Phe
GAA
[SRA]
Identical group No.484377 (1 seq.)
>SRA1030932
SRR035087.351465
454 Sequencing (SRP001808)
420
494
+
Phe
GAA
[SRA]
Identical group No.484417 (1 seq.)
>SRA1031266
SRR035087.402307
454 Sequencing (SRP001808)
426
500
+
Phe
GAA
[SRA]
Identical group No.484419 (1 seq.)
>SRA1031273
SRR035087.405296
454 Sequencing (SRP001808)
147
72
-
Phe
GAA
[SRA]
Identical group No.484443 (1 seq.)
>SRA1031476
SRR035087.437027
454 Sequencing (SRP001808)
108
183
+
Phe
GAA
[SRA]
Identical group No.484476 (1 seq.)
>SRA1031684
SRR035087.471210
454 Sequencing (SRP001808)
420
345
-
Phe
GAA
[SRA]
Identical group No.484488 (1 seq.)
>SRA1031780
SRR035087.485350
454 Sequencing (SRP001808)
373
448
+
Phe
GAA
[SRA]
Identical group No.484527 (1 seq.)
>SRA1032026
SRR035087.535712
454 Sequencing (SRP001808)
251
178
-
Phe
GAA
[SRA]
Identical group No.484540 (1 seq.)
>SRA1032110
SRR035087.554029
454 Sequencing (SRP001808)
271
345
+
Phe
GAA
[SRA]
Identical group No.484548 (1 seq.)
>SRA1032193
SRR035087.573223
454 Sequencing (SRP001808)
155
82
-
Phe
GAA
[SRA]
Identical group No.672265 (1 seq.)
>SRA1028996
SRR035087.56116
454 Sequencing (SRP001808)
238
312
+
Phe
GAA
[SRA]
Identical group No.672316 (1 seq.)
>SRA1029393
SRR035087.121038
454 Sequencing (SRP001808)
24
95
+
Phe
GAA
[SRA]
Identical group No.672365 (1 seq.)
>SRA1029790
SRR035087.181491
454 Sequencing (SRP001808)
294
221
-
Phe
GAA
[SRA]
Identical group No.672393 (1 seq.)
>SRA1030027
SRR035087.218318
454 Sequencing (SRP001808)
113
41
-
Phe
GAA
[SRA]
Identical group No.672418 (1 seq.)
>SRA1030206
SRR035087.242159
454 Sequencing (SRP001808)
159
232
+
Phe
GAA
[SRA]
Identical group No.672546 (2 seq.)
>SRA1031284
SRR035087.406465
454 Sequencing (SRP001808)
71
145
+
Phe
GAA
[SRA]
>SRA1031788
SRR035087.486920
454 Sequencing (SRP001808)
71
145
+
Phe
GAA
[SRA]
Identical group No.672557 (1 seq.)
>SRA1031406
SRR035087.424878
454 Sequencing (SRP001808)
325
396
+
Phe
GAA
[SRA]
Identical group No.672592 (1 seq.)
>SRA1031686
SRR035087.471656
454 Sequencing (SRP001808)
220
293
+
Phe
GAA
[SRA]
Identical group No.672608 (1 seq.)
>SRA1031893
SRR035087.507229
454 Sequencing (SRP001808)
399
325
-
Phe
GAA
[SRA]
Identical group No.788072 (1 seq.)
>SRA1029781
SRR035087.180318
454 Sequencing (SRP001808)
265
194
-
Phe
GAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK