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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GAC
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244467 (1 seq.)
>SRA1029739
SRR035087.173431
454 Sequencing (SRP001808)
98
21
-
Val
GAC
[SRA]
Identical group No.244476 (1 seq.)
>SRA1030088
SRR035087.226237
454 Sequencing (SRP001808)
98
21
-
Val
GAC
[SRA]
Identical group No.244525 (1 seq.)
>SRA1031496
SRR035087.438897
454 Sequencing (SRP001808)
320
396
+
Val
GAC
[SRA]
Identical group No.300284 (1 seq.)
>SRA1028875
SRR035087.27760
454 Sequencing (SRP001808)
143
67
-
Val
GAC
[SRA]
Identical group No.300306 (1 seq.)
>SRA1029031
SRR035087.61209
454 Sequencing (SRP001808)
113
189
+
Val
GAC
[SRA]
Identical group No.300336 (1 seq.)
>SRA1029318
SRR035087.108151
454 Sequencing (SRP001808)
242
168
-
Val
GAC
[SRA]
Identical group No.300368 (1 seq.)
>SRA1029579
SRR035087.148257
454 Sequencing (SRP001808)
196
120
-
Val
GAC
[SRA]
Identical group No.300428 (1 seq.)
>SRA1029931
SRR035087.204362
454 Sequencing (SRP001808)
331
257
-
Val
GAC
[SRA]
Identical group No.300476 (1 seq.)
>SRA1030251
SRR035087.249402
454 Sequencing (SRP001808)
195
271
+
Val
GAC
[SRA]
Identical group No.300483 (1 seq.)
>SRA1030277
SRR035087.254852
454 Sequencing (SRP001808)
53
127
+
Val
GAC
[SRA]
Identical group No.300593 (1 seq.)
>SRA1030945
SRR035087.352807
454 Sequencing (SRP001808)
86
10
-
Val
GAC
[SRA]
Identical group No.300607 (1 seq.)
>SRA1031033
SRR035087.362763
454 Sequencing (SRP001808)
20
96
+
Val
GAC
[SRA]
Identical group No.300646 (1 seq.)
>SRA1031239
SRR035087.396878
454 Sequencing (SRP001808)
87
13
-
Val
GAC
[SRA]
Identical group No.300657 (1 seq.)
>SRA1031319
SRR035087.411633
454 Sequencing (SRP001808)
174
250
+
Val
GAC
[SRA]
Identical group No.300693 (1 seq.)
>SRA1031520
SRR035087.443111
454 Sequencing (SRP001808)
213
286
+
Val
GAC
[SRA]
Identical group No.300789 (1 seq.)
>SRA1032181
SRR035087.570434
454 Sequencing (SRP001808)
375
452
+
Val
GAC
[SRA]
Identical group No.484196 (1 seq.)
>SRA1029750
SRR035087.175827
454 Sequencing (SRP001808)
464
391
-
Val
GAC
[SRA]
Identical group No.484297 (1 seq.)
>SRA1030419
SRR035087.277379
454 Sequencing (SRP001808)
177
102
-
Val
GAC
[SRA]
Identical group No.484358 (1 seq.)
>SRA1030828
SRR035087.336074
454 Sequencing (SRP001808)
308
381
+
Val
GAC
[SRA]
Identical group No.484539 (1 seq.)
>SRA1032108
SRR035087.553887
454 Sequencing (SRP001808)
200
272
+
Val
GAC
[SRA]
Identical group No.484562 (1 seq.)
>SRA1032353
SRR035087.610594
454 Sequencing (SRP001808)
304
379
+
Val
GAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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