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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GAG
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32938 (1 seq.)
>SRA1032266
SRR035087.591662
454 Sequencing (SRP001808)
225
315
+
Leu
GAG
[SRA]
Identical group No.74742 (1 seq.)
>SRA1030963
SRR035087.355200
454 Sequencing (SRP001808)
236
323
+
Leu
GAG
[SRA]
Identical group No.74748 (1 seq.)
>SRA1031249
SRR035087.399838
454 Sequencing (SRP001808)
337
251
-
Leu
GAG
[SRA]
Identical group No.74749 (1 seq.)
>SRA1031328
SRR035087.413367
454 Sequencing (SRP001808)
290
378
+
Leu
GAG
[SRA]
Identical group No.74756 (1 seq.)
>SRA1032130
SRR035087.559056
454 Sequencing (SRP001808)
182
268
+
Leu
GAG
[SRA]
Identical group No.90605 (1 seq.)
>SRA1032300
SRR035087.597979
454 Sequencing (SRP001808)
167
80
-
Leu
GAG
[SRA]
Identical group No.90609 (1 seq.)
>SRA1032371
SRR035087.614863
454 Sequencing (SRP001808)
91
178
+
Leu
GAG
[SRA]
Identical group No.118293 (1 seq.)
>SRA1029162
SRR035087.85422
454 Sequencing (SRP001808)
156
242
+
Leu
GAG
[SRA]
Identical group No.118362 (1 seq.)
>SRA1031492
SRR035087.438152
454 Sequencing (SRP001808)
268
354
+
Leu
GAG
[SRA]
Identical group No.118415 (1 seq.)
>SRA1030182
SRR035087.239272
454 Sequencing (SRP001808)
123
208
+
Leu
GAG
[SRA]
Identical group No.157516 (1 seq.)
>SRA1031136
SRR035087.379163
454 Sequencing (SRP001808)
11
94
+
Leu
GAG
[SRA]
Identical group No.157521 (1 seq.)
>SRA1031268
SRR035087.402992
454 Sequencing (SRP001808)
315
398
+
Leu
GAG
[SRA]
Identical group No.157529 (1 seq.)
>SRA1031713
SRR035087.475906
454 Sequencing (SRP001808)
223
308
+
Leu
GAG
[SRA]
Identical group No.186068 (1 seq.)
>SRA1029191
SRR035087.89864
454 Sequencing (SRP001808)
111
193
+
Leu
GAG
[SRA]
Identical group No.186099 (1 seq.)
>SRA1030949
SRR035087.353503
454 Sequencing (SRP001808)
229
148
-
Leu
GAG
[SRA]
Identical group No.219637 (1 seq.)
>SRA1030662
SRR035087.311233
454 Sequencing (SRP001808)
347
428
+
Leu
GAG
[SRA]
Identical group No.219647 (1 seq.)
>SRA1032335
SRR035087.607953
454 Sequencing (SRP001808)
151
234
+
Leu
GAG
[SRA]
Identical group No.300474 (1 seq.)
>SRA1030227
SRR035087.245929
454 Sequencing (SRP001808)
371
295
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK