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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GCC
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300571 (1 seq.)
>SRA1030790
SRR035087.332101
454 Sequencing (SRP001808)
512
439
-
Gly
GCC
[SRA]
Identical group No.300665 (1 seq.)
>SRA1031358
SRR035087.419478
454 Sequencing (SRP001808)
134
208
+
Gly
GCC
[SRA]
Identical group No.300737 (1 seq.)
>SRA1031795
SRR035087.489989
454 Sequencing (SRP001808)
348
272
-
Gly
GCC
[SRA]
Identical group No.300770 (1 seq.)
>SRA1032078
SRR035087.547835
454 Sequencing (SRP001808)
244
168
-
Gly
GCC
[SRA]
Identical group No.484043 (1 seq.)
>SRA1028824
SRR035087.15295
454 Sequencing (SRP001808)
359
284
-
Gly
GCC
[SRA]
Identical group No.484072 (1 seq.)
>SRA1028992
SRR035087.54798
454 Sequencing (SRP001808)
256
181
-
Gly
GCC
[SRA]
Identical group No.484110 (1 seq.)
>SRA1029206
SRR035087.91834
454 Sequencing (SRP001808)
222
295
+
Gly
GCC
[SRA]
Identical group No.672271 (1 seq.)
>SRA1029053
SRR035087.65738
454 Sequencing (SRP001808)
424
498
+
Gly
GCC
[SRA]
Identical group No.672347 (1 seq.)
>SRA1029640
SRR035087.154834
454 Sequencing (SRP001808)
216
143
-
Gly
GCC
[SRA]
Identical group No.672351 (1 seq.)
>SRA1029665
SRR035087.160545
454 Sequencing (SRP001808)
95
21
-
Gly
GCC
[SRA]
Identical group No.672427 (2 seq.)
>SRA1030267
SRR035087.252756
454 Sequencing (SRP001808)
197
125
-
Gly
GCC
[SRA]
>SRA1032061
SRR035087.542384
454 Sequencing (SRP001808)
197
125
-
Gly
GCC
[SRA]
Identical group No.672497 (1 seq.)
>SRA1030927
SRR035087.349811
454 Sequencing (SRP001808)
4
78
+
Gly
GCC
[SRA]
Identical group No.672528 (1 seq.)
>SRA1031147
SRR035087.379960
454 Sequencing (SRP001808)
87
161
+
Gly
GCC
[SRA]
Identical group No.672572 (1 seq.)
>SRA1031522
SRR035087.443181
454 Sequencing (SRP001808)
193
267
+
Gly
GCC
[SRA]
Identical group No.672597 (2 seq.)
>SRA1031734
SRR035087.478106
454 Sequencing (SRP001808)
136
210
+
Gly
GCC
[SRA]
>SRA1031967
SRR035087.521981
454 Sequencing (SRP001808)
136
210
+
Gly
GCC
[SRA]
Identical group No.672646 (1 seq.)
>SRA1032220
SRR035087.579830
454 Sequencing (SRP001808)
233
307
+
Gly
GCC
[SRA]
Identical group No.672663 (1 seq.)
>SRA1032379
SRR035087.618167
454 Sequencing (SRP001808)
201
127
-
Gly
GCC
[SRA]
Identical group No.672664 (1 seq.)
>SRA1032387
SRR035087.620057
454 Sequencing (SRP001808)
191
264
+
Gly
GCC
[SRA]
Identical group No.788000 (1 seq.)
>SRA1028864
SRR035087.25393
454 Sequencing (SRP001808)
34
105
+
Gly
GCC
[SRA]
Identical group No.788070 (1 seq.)
>SRA1029760
SRR035087.177487
454 Sequencing (SRP001808)
85
12
-
Gly
GCC
[SRA]
Identical group No.788114 (1 seq.)
>SRA1030429
SRR035087.278759
454 Sequencing (SRP001808)
138
211
+
Gly
GCC
[SRA]
Identical group No.788221 (1 seq.)
>SRA1032125
SRR035087.557704
454 Sequencing (SRP001808)
191
120
-
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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