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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GCG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244502 (1 seq.)
>SRA1030752
SRR035087.325662
454 Sequencing (SRP001808)
242
167
-
Arg
GCG
[SRA]
Identical group No.244506 (1 seq.)
>SRA1030797
SRR035087.332905
454 Sequencing (SRP001808)
317
394
+
Arg
GCG
[SRA]
Identical group No.300332 (1 seq.)
>SRA1029292
SRR035087.104059
454 Sequencing (SRP001808)
213
137
-
Arg
GCG
[SRA]
Identical group No.300516 (1 seq.)
>SRA1030430
SRR035087.278759
454 Sequencing (SRP001808)
223
299
+
Arg
GCG
[SRA]
Identical group No.300580 (1 seq.)
>SRA1030856
SRR035087.340195
454 Sequencing (SRP001808)
121
195
+
Arg
GCG
[SRA]
Identical group No.300643 (1 seq.)
>SRA1031223
SRR035087.395026
454 Sequencing (SRP001808)
325
401
+
Arg
GCG
[SRA]
Identical group No.301001 (1 seq.)
>SRA1029860
SRR035087.193351
454 Sequencing (SRP001808)
103
177
+
Arg
GCG
[SRA]
Identical group No.484282 (1 seq.)
>SRA1030307
SRR035087.259994
454 Sequencing (SRP001808)
353
278
-
Arg
GCG
[SRA]
Identical group No.484334 (1 seq.)
>SRA1030657
SRR035087.310414
454 Sequencing (SRP001808)
103
28
-
Arg
GCG
[SRA]
Identical group No.484390 (1 seq.)
>SRA1031021
SRR035087.361045
454 Sequencing (SRP001808)
117
190
+
Arg
GCG
[SRA]
Identical group No.484525 (1 seq.)
>SRA1032016
SRR035087.533261
454 Sequencing (SRP001808)
207
279
+
Arg
GCG
[SRA]
Identical group No.672275 (1 seq.)
>SRA1029063
SRR035087.68268
454 Sequencing (SRP001808)
240
314
+
Arg
GCG
[SRA]
Identical group No.672389 (1 seq.)
>SRA1030005
SRR035087.215196
454 Sequencing (SRP001808)
321
247
-
Arg
GCG
[SRA]
Identical group No.672545 (1 seq.)
>SRA1031279
SRR035087.405965
454 Sequencing (SRP001808)
227
153
-
Arg
GCG
[SRA]
Identical group No.672610 (1 seq.)
>SRA1031901
SRR035087.508952
454 Sequencing (SRP001808)
318
244
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK