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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GCG
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158754 (6 seq.)
>WENV170620841
FUWD013041031
[FUWD] metagenome; unknown
947
1024
+
Arg
GCG
[ENA]
¢þ
>WENV170628996
FUWD013258121
[FUWD] metagenome; unknown
2903
2826
-
Arg
GCG
[ENA]
¢þ
>SRA1018830
SRR035082.354343
454 Sequencing (SRP001803)
217
140
-
Arg
GCG
[SRA]
>SRA1030645
SRR035087.308797
454 Sequencing (SRP001808)
70
147
+
Arg
GCG
[SRA]
>SRA1040071
SRR035091.30673
454 Sequencing (SRP001812)
181
258
+
Arg
GCG
[SRA]
>SRA1044379
SRR035092.270893
454 Sequencing (SRP001813)
85
8
-
Arg
GCG
[SRA]
Identical group No.158759 (1 seq.)
>SRA1030752
SRR035087.325662
454 Sequencing (SRP001808)
242
167
-
Arg
GCG
[SRA]
Identical group No.158763 (1 seq.)
>SRA1030797
SRR035087.332905
454 Sequencing (SRP001808)
317
394
+
Arg
GCG
[SRA]
Identical group No.177894 (7 seq.)
>WENV170602330
FUWD010226790
[FUWD] metagenome; unknown
257
181
-
Arg
GCG
[ENA]
¢þ
>WENV170622793
FUWD013121141
[FUWD] metagenome; unknown
961
1037
+
Arg
GCG
[ENA]
¢þ
>WENV170631006
FUWD013334893
[FUWD] metagenome; unknown
961
1037
+
Arg
GCG
[ENA]
¢þ
>SRA1017166
SRR035082.92167
454 Sequencing (SRP001803)
284
208
-
Arg
GCG
[SRA]
>SRA1019452
SRR035082.459112
454 Sequencing (SRP001803)
334
258
-
Arg
GCG
[SRA]
>SRA1029778
SRR035087.180138
454 Sequencing (SRP001808)
397
321
-
Arg
GCG
[SRA]
>SRA1036604
SRR035089.560196
454 Sequencing (SRP001810)
332
256
-
Arg
GCG
[SRA]
Identical group No.177927 (3 seq.)
>WENV170612005
FUWD012480552
[FUWD] metagenome; unknown
22
96
+
Arg
GCG
[ENA]
¢þ
>SRA1029860
SRR035087.193351
454 Sequencing (SRP001808)
103
177
+
Arg
GCG
[SRA]
>SRA1036174
SRR035089.462378
454 Sequencing (SRP001810)
29
103
+
Arg
GCG
[SRA]
Identical group No.196083 (19 seq.)
>WENV180066733
MPLY02150971
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
133
57
-
Arg
GCG
[ENA]
¢þ
>WENV180068951
MPLZ02076231
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
260
336
+
Arg
GCG
[ENA]
¢þ
>WENV180070479
MPLZ02170068
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
298
222
-
Arg
GCG
[ENA]
¢þ
>WENV180073871
MPMA02105694
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
247
323
+
Arg
GCG
[ENA]
¢þ
>WENV180078406
MPMB02103264
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
239
315
+
Arg
GCG
[ENA]
¢þ
>WENV183795772
PVBE010198814
[PVBE] marine metagenome; water
46
122
+
Arg
GCG
[ENA]
¢þ
>WENV170016849
BARS01018764
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
752
828
+
Arg
GCG
[ENA]
¢þ
>WENV170016906
BARS01025374
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
370
294
-
Arg
GCG
[ENA]
¢þ
>WENV170571858
FLOH01000345
[FLOH] marine metagenome; water
2543
2467
-
Arg
GCG
[ENA]
¢þ
>WENV170673994
LAZR01038347
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
210
285
+
Arg
GCG
[ENA]
¢þ
>W1910574735
JQAN02000010
Chloroflexota
Dehalogenimonas etheniformans GP [JQAN]
241333
241257
-
Arg
GCG
[ENA]
¡û
>W1810569099
QEFQ01000004
Chloroflexota
Dehalogenimonas alkenigignens BRE15M [QEFQ]
51908
51832
-
Arg
GCG
[ENA]
¡û
>C151081949
CP011392
Chloroflexota
Dehalogenimonas sp. WBC-2 [CP011392]
1672110
1672186
+
Arg
GCG
-
¡û
>SRA1028776
SRR035087.1048
454 Sequencing (SRP001808)
207
131
-
Arg
GCG
[SRA]
>SRA1029292
SRR035087.104059
454 Sequencing (SRP001808)
213
137
-
Arg
GCG
[SRA]
>W10116191
ADNP01000018
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [ADNP]
4697
4773
+
Arg
GCG
[ENA]
¡û
>C10105317
CP002084
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [CP002084]
1441963
1442039
+
Arg
GCG
[Ensembl]
¡û
>W11120860
ADNP01000018
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [ADNP]
4697
4773
+
Arg
GCG
[ENA]
¡û
>W1710718303
LFDV01000001
Chloroflexota
Dehalogenimonas alkenigignens [LFDV]
91550
91474
-
Arg
GCG
[ENA]
¡û
Identical group No.196281 (1 seq.)
>SRA1030430
SRR035087.278759
454 Sequencing (SRP001808)
223
299
+
Arg
GCG
[SRA]
Identical group No.196336 (1 seq.)
>SRA1030856
SRR035087.340195
454 Sequencing (SRP001808)
121
195
+
Arg
GCG
[SRA]
Identical group No.196394 (1 seq.)
>SRA1031223
SRR035087.395026
454 Sequencing (SRP001808)
325
401
+
Arg
GCG
[SRA]
Identical group No.285116 (34 seq.)
>W1711396627
MEVP01000050
Unclassified
candidate division WWE3 bacterium RIFOXYA1_FULL_41_11 [MEVP]
2388
2313
-
Arg
GCG
[ENA]
¡û
>W1711396658
MEVQ01000041
Unclassified
candidate division WWE3 bacterium RIFOXYA1_FULL_42_9 [MEVQ]
35413
35338
-
Arg
GCG
[ENA]
¡û
>W1711396674
MEVR01000012
Unclassified
candidate division WWE3 bacterium RIFOXYA12_FULL_43_11 [MEVR]
8891
8966
+
Arg
GCG
[ENA]
¡û
>W1711396718
MEVS01000020
Unclassified
candidate division WWE3 bacterium RIFOXYA2_FULL_43_12 [MEVS]
34468
34393
-
Arg
GCG
[ENA]
¡û
>W1711396844
MEVV01000016
Unclassified
candidate division WWE3 bacterium RIFOXYB1_FULL_42_27 [MEVV]
2366
2291
-
Arg
GCG
[ENA]
¡û
>W1711396914
MEVX01000015
Unclassified
candidate division WWE3 bacterium RIFOXYB1_FULL_43_24 [MEVX]
30001
30076
+
Arg
GCG
[ENA]
¡û
>W1711396979
MEVZ01000009
Unclassified
candidate division WWE3 bacterium RIFOXYB2_FULL_43_9 [MEVZ]
10891
10816
-
Arg
GCG
[ENA]
¡û
>W1711397111
MEWC01000015
Unclassified
candidate division WWE3 bacterium RIFOXYC1_FULL_42_13 [MEWC]
31172
31247
+
Arg
GCG
[ENA]
¡û
>W1711397133
MEWD01000001
Unclassified
candidate division WWE3 bacterium RIFOXYC1_FULL_42_17 [MEWD]
8360
8285
-
Arg
GCG
[ENA]
¡û
>W1711397360
MEWI01000007
Unclassified
candidate division WWE3 bacterium RIFOXYD1_FULL_42_24 [MEWI]
73421
73346
-
Arg
GCG
[ENA]
¡û
>W1711397395
MEWJ01000035
Unclassified
candidate division WWE3 bacterium RIFOXYD1_FULL_43_17 [MEWJ]
13930
13855
-
Arg
GCG
[ENA]
¡û
>WENV170971527
MTKX01006895
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
106
31
-
Arg
GCG
[ENA]
¢þ
>WENV170979506
MTKZ01094240
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1478
1403
-
Arg
GCG
[ENA]
¢þ
>C151014558
CP006914
Unclassified
candidate division WWE3 bacterium RAAC2_WWE3_1 [CP006914]
715669
715744
+
Arg
GCG
-
¡û
>SRA1030307
SRR035087.259994
454 Sequencing (SRP001808)
353
278
-
Arg
GCG
[SRA]
>W1511606116
LCBB01000007
Unclassified
candidate division WWE3 bacterium GW2011_GWC2_41_23 [LCBB]
29578
29503
-
Arg
GCG
[ENA]
¡û
>W1511606397
LCBK01000004
Unclassified
candidate division WWE3 bacterium GW2011_GWF2_41_45 [LCBK]
39745
39670
-
Arg
GCG
[ENA]
¡û
>W1511606867
LCBZ01000010
Unclassified
candidate division WWE3 bacterium GW2011_GWE1_41_72 [LCBZ]
23963
24038
+
Arg
GCG
[ENA]
¡û
>W1511607174
LCCK01000006
Unclassified
candidate division WWE3 bacterium GW2011_GWD2_42_11 [LCCK]
24021
24096
+
Arg
GCG
[ENA]
¡û
>W1511607223
LCCL01000008
Unclassified
candidate division WWE3 bacterium GW2011_GWB1_42_117 [LCCL]
63008
62933
-
Arg
GCG
[ENA]
¡û
>W1511607257
LCCM01000007
Unclassified
candidate division WWE3 bacterium GW2011_GWA1_42_12 [LCCM]
67884
67809
-
Arg
GCG
[ENA]
¡û
>W1511607506
LCCU01000007
Unclassified
candidate division WWE3 bacterium GW2011_GWF1_42_14 [LCCU]
8703
8628
-
Arg
GCG
[ENA]
¡û
>W1511607610
LCCX01000006
Unclassified
candidate division WWE3 bacterium GW2011_GWE1_42_16 [LCCX]
2829
2754
-
Arg
GCG
[ENA]
¡û
>W1511608026
LCDK01000007
Unclassified
candidate division WWE3 bacterium GW2011_GWE2_42_25 [LCDK]
73154
73079
-
Arg
GCG
[ENA]
¡û
>W1511608404
LCDV01000027
Unclassified
candidate division WWE3 bacterium GW2011_GWA1_42_46 [LCDV]
7365
7440
+
Arg
GCG
[ENA]
¡û
>W1511608441
LCDW01000041
Unclassified
Candidatus Collierbacteria bacterium GW2011_GWE2_42_48 bacterium GW2011_GWE2_42_48 [LCDW]
3993
3918
-
Arg
GCG
[ENA]
¡û
>W1511608496
LCDZ01000006
Unclassified
candidate division WWE3 bacterium GW2011_GWF1_42_51 [LCDZ]
2416
2341
-
Arg
GCG
[ENA]
¡û
>W1511608856
LCEM01000015
Unclassified
candidate division WWE3 bacterium GW2011_GWD1_42_70 [LCEM]
204
129
-
Arg
GCG
[ENA]
¡û
>W1511610131
LCGA01000012
Unclassified
candidate division WWE3 bacterium GW2011_GWF2_43_18 [LCGA]
15261
15186
-
Arg
GCG
[ENA]
¡û
>W1511610309
LCGG01000005
Unclassified
candidate division WWE3 bacterium GW2011_GWA2_43_24 [LCGG]
63117
63042
-
Arg
GCG
[ENA]
¡û
>W1511611015
LCHD01000008
Unclassified
candidate division WWE3 bacterium GW2011_GWA1_43_94 [LCHD]
63092
63017
-
Arg
GCG
[ENA]
¡û
>W1511612467
LCIX01000006
Unclassified
candidate division WWE3 bacterium GW2011_GWC1_44_308 [LCIX]
49941
49866
-
Arg
GCG
[ENA]
¡û
>W1511612660
LCJF01000011
Unclassified
candidate division WWE3 bacterium GW2011_GWE1_44_51 [LCJF]
4055
3980
-
Arg
GCG
[ENA]
¡û
>W1511612931
LCJP01000015
Unclassified
candidate division WWE3 bacterium GW2011_GWC2_44_85 [LCJP]
4055
3980
-
Arg
GCG
[ENA]
¡û
Identical group No.290291 (5 seq.)
>WENV170955075
MJUJ01009113
[MJUJ] soil metagenome; viral particles from soil sample CN
312
239
-
Arg
GCG
[ENA]
¢þ
>SRA1032373
SRR035087.616016
454 Sequencing (SRP001808)
113
188
+
Arg
GCG
[SRA]
>W1511598660
LBRH01000066
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWD2_36_12 bacterium GW2011_GWD2_36_12 [LBRH]
4888
4963
+
Arg
GCG
[ENA]
¡û
>W1511599093
LBRX01000055
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWE2_36_40 bacterium GW2011_GWE2_36_40 [LBRX]
4869
4944
+
Arg
GCG
[ENA]
¡û
>W1511599337
LBSG01000083
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWE1_36_7 bacterium GW2011_GWE1_36_7 [LBSG]
4879
4954
+
Arg
GCG
[ENA]
¡û
Identical group No.302885 (1 seq.)
>SRA1030657
SRR035087.310414
454 Sequencing (SRP001808)
103
28
-
Arg
GCG
[SRA]
Identical group No.302936 (1 seq.)
>SRA1031021
SRR035087.361045
454 Sequencing (SRP001808)
117
190
+
Arg
GCG
[SRA]
Identical group No.303052 (1 seq.)
>SRA1032016
SRR035087.533261
454 Sequencing (SRP001808)
207
279
+
Arg
GCG
[SRA]
Identical group No.412699 (1 seq.)
>SRA1029063
SRR035087.68268
454 Sequencing (SRP001808)
240
314
+
Arg
GCG
[SRA]
Identical group No.412800 (1 seq.)
>SRA1030005
SRR035087.215196
454 Sequencing (SRP001808)
321
247
-
Arg
GCG
[SRA]
Identical group No.412821 (4 seq.)
>WENV170626927
FUWD013230125
[FUWD] metagenome; unknown
5000
4926
-
Arg
GCG
[ENA]
¢þ
>WENV170630193
FUWD013298004
[FUWD] metagenome; unknown
7229
7303
+
Arg
GCG
[ENA]
¢þ
>SRA1030164
SRR035087.236054
454 Sequencing (SRP001808)
170
96
-
Arg
GCG
[SRA]
>SRA1031965
SRR035087.521813
454 Sequencing (SRP001808)
273
347
+
Arg
GCG
[SRA]
Identical group No.412941 (2 seq.)
>SRA1018570
SRR035082.312606
454 Sequencing (SRP001803)
415
343
-
Arg
GCG
[SRA]
>SRA1031279
SRR035087.405965
454 Sequencing (SRP001808)
227
153
-
Arg
GCG
[SRA]
Identical group No.412991 (5 seq.)
>WENV170612662
FUWD012653549
[FUWD] metagenome; unknown
264
337
+
Arg
GCG
[ENA]
¢þ
>SRA1017949
SRR035082.218806
454 Sequencing (SRP001803)
26
99
+
Arg
GCG
[SRA]
>SRA1018105
SRR035082.241239
454 Sequencing (SRP001803)
130
203
+
Arg
GCG
[SRA]
>SRA1031835
SRR035087.496807
454 Sequencing (SRP001808)
217
144
-
Arg
GCG
[SRA]
>SRA1044517
SRR035092.292750
454 Sequencing (SRP001813)
264
337
+
Arg
GCG
[SRA]
Identical group No.412993 (6 seq.)
>WENV170612645
FUWD012650165
[FUWD] metagenome; unknown
163
235
+
Arg
GCG
[ENA]
¢þ
>SRA1018226
SRR035082.258337
454 Sequencing (SRP001803)
137
209
+
Arg
GCG
[SRA]
>SRA1031901
SRR035087.508952
454 Sequencing (SRP001808)
318
244
-
Arg
GCG
[SRA]
>SRA1041596
SRR035091.267892
454 Sequencing (SRP001812)
305
379
+
Arg
GCG
[SRA]
>SRA1044131
SRR035092.228757
454 Sequencing (SRP001813)
169
241
+
Arg
GCG
[SRA]
>SRA1047906
SRR035094.65164
454 Sequencing (SRP001815)
27
101
+
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK