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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GCG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244496 (6 seq.)
>WENV170620841
FUWD013041031
[FUWD] metagenome; unknown
947
1024
+
Arg
GCG
[ENA]
¢þ
>WENV170628996
FUWD013258121
[FUWD] metagenome; unknown
2903
2826
-
Arg
GCG
[ENA]
¢þ
>SRA1018830
SRR035082.354343
454 Sequencing (SRP001803)
217
140
-
Arg
GCG
[SRA]
>SRA1030645
SRR035087.308797
454 Sequencing (SRP001808)
70
147
+
Arg
GCG
[SRA]
>SRA1040071
SRR035091.30673
454 Sequencing (SRP001812)
181
258
+
Arg
GCG
[SRA]
>SRA1044379
SRR035092.270893
454 Sequencing (SRP001813)
85
8
-
Arg
GCG
[SRA]
Identical group No.272927 (7 seq.)
>WENV170602330
FUWD010226790
[FUWD] metagenome; unknown
257
181
-
Arg
GCG
[ENA]
¢þ
>WENV170622793
FUWD013121141
[FUWD] metagenome; unknown
961
1037
+
Arg
GCG
[ENA]
¢þ
>WENV170631006
FUWD013334893
[FUWD] metagenome; unknown
961
1037
+
Arg
GCG
[ENA]
¢þ
>SRA1017166
SRR035082.92167
454 Sequencing (SRP001803)
284
208
-
Arg
GCG
[SRA]
>SRA1019452
SRR035082.459112
454 Sequencing (SRP001803)
334
258
-
Arg
GCG
[SRA]
>SRA1029778
SRR035087.180138
454 Sequencing (SRP001808)
397
321
-
Arg
GCG
[SRA]
>SRA1036604
SRR035089.560196
454 Sequencing (SRP001810)
332
256
-
Arg
GCG
[SRA]
Identical group No.300275 (5 seq.)
>WENV180070479
MPLZ02170068
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
298
222
-
Arg
GCG
[ENA]
¢þ
>WENV180073871
MPMA02105694
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
247
323
+
Arg
GCG
[ENA]
¢þ
>WENV180078406
MPMB02103264
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
239
315
+
Arg
GCG
[ENA]
¢þ
>WENV170673994
LAZR01038347
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
210
285
+
Arg
GCG
[ENA]
¢þ
>SRA1028776
SRR035087.1048
454 Sequencing (SRP001808)
207
131
-
Arg
GCG
[SRA]
Identical group No.484565 (2 seq.)
>SRA1032373
SRR035087.616016
454 Sequencing (SRP001808)
113
188
+
Arg
GCG
[SRA]
>W1511600706
LBTZ01000010
Unclassified
Parcubacteria group bacterium GW2011_GWD2_38_11 GW2011_GWD2_38_11 [LBTZ]
27267
27342
+
Arg
GCG
[ENA]
¡û
Identical group No.672412 (4 seq.)
>WENV170626927
FUWD013230125
[FUWD] metagenome; unknown
5000
4926
-
Arg
GCG
[ENA]
¢þ
>WENV170630193
FUWD013298004
[FUWD] metagenome; unknown
7229
7303
+
Arg
GCG
[ENA]
¢þ
>SRA1030164
SRR035087.236054
454 Sequencing (SRP001808)
170
96
-
Arg
GCG
[SRA]
>SRA1031965
SRR035087.521813
454 Sequencing (SRP001808)
273
347
+
Arg
GCG
[SRA]
Identical group No.672605 (5 seq.)
>WENV170612662
FUWD012653549
[FUWD] metagenome; unknown
264
337
+
Arg
GCG
[ENA]
¢þ
>SRA1017949
SRR035082.218806
454 Sequencing (SRP001803)
26
99
+
Arg
GCG
[SRA]
>SRA1018105
SRR035082.241239
454 Sequencing (SRP001803)
130
203
+
Arg
GCG
[SRA]
>SRA1031835
SRR035087.496807
454 Sequencing (SRP001808)
217
144
-
Arg
GCG
[SRA]
>SRA1044517
SRR035092.292750
454 Sequencing (SRP001813)
264
337
+
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK