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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GGC
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300329 (1 seq.)
>SRA1029262
SRR035087.99160
454 Sequencing (SRP001808)
204
277
+
Ala
GGC
[SRA]
Identical group No.300338 (1 seq.)
>SRA1029343
SRR035087.112132
454 Sequencing (SRP001808)
105
181
+
Ala
GGC
[SRA]
Identical group No.300464 (1 seq.)
>SRA1030157
SRR035087.234963
454 Sequencing (SRP001808)
151
75
-
Ala
GGC
[SRA]
Identical group No.300594 (1 seq.)
>SRA1030957
SRR035087.354154
454 Sequencing (SRP001808)
245
169
-
Ala
GGC
[SRA]
Identical group No.300619 (1 seq.)
>SRA1031119
SRR035087.376853
454 Sequencing (SRP001808)
230
306
+
Ala
GGC
[SRA]
Identical group No.300695 (1 seq.)
>SRA1031537
SRR035087.446350
454 Sequencing (SRP001808)
458
381
-
Ala
GGC
[SRA]
Identical group No.484042 (1 seq.)
>SRA1028812
SRR035087.13633
454 Sequencing (SRP001808)
440
365
-
Ala
GGC
[SRA]
Identical group No.484085 (1 seq.)
>SRA1029086
SRR035087.70356
454 Sequencing (SRP001808)
425
501
+
Ala
GGC
[SRA]
Identical group No.484096 (1 seq.)
>SRA1029133
SRR035087.79097
454 Sequencing (SRP001808)
331
256
-
Ala
GGC
[SRA]
Identical group No.484133 (1 seq.)
>SRA1029361
SRR035087.115419
454 Sequencing (SRP001808)
318
242
-
Ala
GGC
[SRA]
Identical group No.484155 (2 seq.)
>SRA1029476
SRR035087.133632
454 Sequencing (SRP001808)
237
162
-
Ala
GGC
[SRA]
>SRA1031941
SRR035087.516254
454 Sequencing (SRP001808)
227
152
-
Ala
GGC
[SRA]
Identical group No.484167 (1 seq.)
>SRA1029565
SRR035087.146413
454 Sequencing (SRP001808)
315
390
+
Ala
GGC
[SRA]
Identical group No.484303 (1 seq.)
>SRA1030447
SRR035087.280583
454 Sequencing (SRP001808)
50
125
+
Ala
GGC
[SRA]
Identical group No.484440 (1 seq.)
>SRA1031460
SRR035087.433601
454 Sequencing (SRP001808)
63
138
+
Ala
GGC
[SRA]
Identical group No.484460 (1 seq.)
>SRA1031579
SRR035087.453145
454 Sequencing (SRP001808)
299
372
+
Ala
GGC
[SRA]
Identical group No.672358 (1 seq.)
>SRA1029705
SRR035087.167642
454 Sequencing (SRP001808)
301
375
+
Ala
GGC
[SRA]
Identical group No.672625 (1 seq.)
>SRA1031993
SRR035087.527607
454 Sequencing (SRP001808)
328
254
-
Ala
GGC
[SRA]
Identical group No.788183 (1 seq.)
>SRA1031576
SRR035087.452474
454 Sequencing (SRP001808)
227
156
-
Ala
GGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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