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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GGG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235641 (1 seq.)
>SRA1028815
SRR035087.14080
454 Sequencing (SRP001808)
541
463
-
Pro
GGG
[SRA]
Identical group No.235648 (1 seq.)
>SRA1029586
SRR035087.149268
454 Sequencing (SRP001808)
130
208
+
Pro
GGG
[SRA]
Identical group No.244541 (1 seq.)
>SRA1031786
SRR035087.486616
454 Sequencing (SRP001808)
283
207
-
Pro
GGG
[SRA]
Identical group No.244547 (1 seq.)
>SRA1031892
SRR035087.506643
454 Sequencing (SRP001808)
199
122
-
Pro
GGG
[SRA]
Identical group No.244560 (1 seq.)
>SRA1032395
SRR035087.621503
454 Sequencing (SRP001808)
359
434
+
Pro
GGG
[SRA]
Identical group No.300348 (1 seq.)
>SRA1029422
SRR035087.125161
454 Sequencing (SRP001808)
194
118
-
Pro
GGG
[SRA]
Identical group No.300384 (1 seq.)
>SRA1029657
SRR035087.158416
454 Sequencing (SRP001808)
357
283
-
Pro
GGG
[SRA]
Identical group No.300422 (1 seq.)
>SRA1029899
SRR035087.198598
454 Sequencing (SRP001808)
142
66
-
Pro
GGG
[SRA]
Identical group No.300451 (1 seq.)
>SRA1030094
SRR035087.226957
454 Sequencing (SRP001808)
428
354
-
Pro
GGG
[SRA]
Identical group No.300452 (1 seq.)
>SRA1030097
SRR035087.227189
454 Sequencing (SRP001808)
322
246
-
Pro
GGG
[SRA]
Identical group No.300560 (1 seq.)
>SRA1030728
SRR035087.321239
454 Sequencing (SRP001808)
167
91
-
Pro
GGG
[SRA]
Identical group No.300788 (1 seq.)
>SRA1032177
SRR035087.568752
454 Sequencing (SRP001808)
220
144
-
Pro
GGG
[SRA]
Identical group No.484274 (1 seq.)
>SRA1030245
SRR035087.249051
454 Sequencing (SRP001808)
26
98
+
Pro
GGG
[SRA]
Identical group No.672643 (1 seq.)
>SRA1032209
SRR035087.577062
454 Sequencing (SRP001808)
222
151
-
Pro
GGG
[SRA]
Identical group No.788004 (1 seq.)
>SRA1028930
SRR035087.38663
454 Sequencing (SRP001808)
221
148
-
Pro
GGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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