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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GGT
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300337 (1 seq.)
>SRA1029335
SRR035087.110664
454 Sequencing (SRP001808)
368
441
+
Thr
GGT
[SRA]
Identical group No.300445 (1 seq.)
>SRA1030041
SRR035087.220421
454 Sequencing (SRP001808)
123
197
+
Thr
GGT
[SRA]
Identical group No.300635 (1 seq.)
>SRA1031190
SRR035087.388630
454 Sequencing (SRP001808)
203
128
-
Thr
GGT
[SRA]
Identical group No.300997 (1 seq.)
>SRA1028895
SRR035087.32727
454 Sequencing (SRP001808)
85
161
+
Thr
GGT
[SRA]
Identical group No.484082 (1 seq.)
>SRA1029057
SRR035087.67412
454 Sequencing (SRP001808)
78
153
+
Thr
GGT
[SRA]
Identical group No.484099 (1 seq.)
>SRA1029148
SRR035087.82028
454 Sequencing (SRP001808)
406
481
+
Thr
GGT
[SRA]
Identical group No.484121 (1 seq.)
>SRA1029271
SRR035087.100773
454 Sequencing (SRP001808)
337
265
-
Thr
GGT
[SRA]
Identical group No.484186 (1 seq.)
>SRA1029690
SRR035087.164518
454 Sequencing (SRP001808)
138
213
+
Thr
GGT
[SRA]
Identical group No.484255 (1 seq.)
>SRA1030128
SRR035087.230735
454 Sequencing (SRP001808)
212
137
-
Thr
GGT
[SRA]
Identical group No.484258 (1 seq.)
>SRA1030140
SRR035087.232995
454 Sequencing (SRP001808)
339
264
-
Thr
GGT
[SRA]
Identical group No.484283 (1 seq.)
>SRA1030312
SRR035087.261476
454 Sequencing (SRP001808)
37
112
+
Thr
GGT
[SRA]
Identical group No.484302 (1 seq.)
>SRA1030443
SRR035087.280337
454 Sequencing (SRP001808)
30
105
+
Thr
GGT
[SRA]
Identical group No.484351 (2 seq.)
>SRA1030800
SRR035087.333207
454 Sequencing (SRP001808)
383
308
-
Thr
GGT
[SRA]
>SRA1030898
SRR035087.343919
454 Sequencing (SRP001808)
138
63
-
Thr
GGT
[SRA]
Identical group No.484414 (1 seq.)
>SRA1031233
SRR035087.395843
454 Sequencing (SRP001808)
340
265
-
Thr
GGT
[SRA]
Identical group No.484448 (1 seq.)
>SRA1031505
SRR035087.440241
454 Sequencing (SRP001808)
232
304
+
Thr
GGT
[SRA]
Identical group No.484499 (1 seq.)
>SRA1031843
SRR035087.498359
454 Sequencing (SRP001808)
147
219
+
Thr
GGT
[SRA]
Identical group No.484501 (1 seq.)
>SRA1031861
SRR035087.499823
454 Sequencing (SRP001808)
308
233
-
Thr
GGT
[SRA]
Identical group No.672273 (2 seq.)
>SRA1029060
SRR035087.67766
454 Sequencing (SRP001808)
101
30
-
Thr
GGT
[SRA]
>SRA1031434
SRR035087.428447
454 Sequencing (SRP001808)
101
30
-
Thr
GGT
[SRA]
Identical group No.672355 (1 seq.)
>SRA1029693
SRR035087.165896
454 Sequencing (SRP001808)
487
413
-
Thr
GGT
[SRA]
Identical group No.672435 (1 seq.)
>SRA1030338
SRR035087.265099
454 Sequencing (SRP001808)
237
309
+
Thr
GGT
[SRA]
Identical group No.672443 (2 seq.)
>SRA1030408
SRR035087.275907
454 Sequencing (SRP001808)
309
235
-
Thr
GGT
[SRA]
>SRA1031193
SRR035087.388878
454 Sequencing (SRP001808)
309
235
-
Thr
GGT
[SRA]
Identical group No.672445 (1 seq.)
>SRA1030421
SRR035087.278208
454 Sequencing (SRP001808)
254
325
+
Thr
GGT
[SRA]
Identical group No.672459 (1 seq.)
>SRA1030523
SRR035087.290326
454 Sequencing (SRP001808)
358
284
-
Thr
GGT
[SRA]
Identical group No.672460 (1 seq.)
>SRA1030527
SRR035087.290385
454 Sequencing (SRP001808)
316
242
-
Thr
GGT
[SRA]
Identical group No.672464 (1 seq.)
>SRA1030562
SRR035087.296017
454 Sequencing (SRP001808)
256
328
+
Thr
GGT
[SRA]
Identical group No.672533 (1 seq.)
>SRA1031185
SRR035087.388352
454 Sequencing (SRP001808)
263
189
-
Thr
GGT
[SRA]
Identical group No.672548 (1 seq.)
>SRA1031315
SRR035087.410749
454 Sequencing (SRP001808)
16
90
+
Thr
GGT
[SRA]
Identical group No.672551 (1 seq.)
>SRA1031354
SRR035087.418414
454 Sequencing (SRP001808)
341
269
-
Thr
GGT
[SRA]
Identical group No.672619 (1 seq.)
>SRA1031958
SRR035087.520801
454 Sequencing (SRP001808)
139
67
-
Thr
GGT
[SRA]
Identical group No.672622 (1 seq.)
>SRA1031969
SRR035087.522367
454 Sequencing (SRP001808)
167
95
-
Thr
GGT
[SRA]
Identical group No.788181 (1 seq.)
>SRA1031497
SRR035087.439080
454 Sequencing (SRP001808)
248
175
-
Thr
GGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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