This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GTA
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21431 (1 seq.)
>SRA1031931
SRR035087.515201
454 Sequencing (SRP001808)
112
21
-
Tyr
GTA
[SRA]
Identical group No.74746 (1 seq.)
>SRA1031150
SRR035087.380677
454 Sequencing (SRP001808)
214
302
+
Tyr
GTA
[SRA]
Identical group No.90567 (1 seq.)
>SRA1030510
SRR035087.289189
454 Sequencing (SRP001808)
358
445
+
Tyr
GTA
[SRA]
Identical group No.90587 (1 seq.)
>SRA1031504
SRR035087.440241
454 Sequencing (SRP001808)
48
135
+
Tyr
GTA
[SRA]
Identical group No.90623 (1 seq.)
>SRA1030627
SRR035087.306377
454 Sequencing (SRP001808)
244
329
+
Tyr
GTA
[SRA]
Identical group No.118306 (1 seq.)
>SRA1029683
SRR035087.163026
454 Sequencing (SRP001808)
455
369
-
Tyr
GTA
[SRA]
Identical group No.118332 (1 seq.)
>SRA1030500
SRR035087.288051
454 Sequencing (SRP001808)
269
355
+
Tyr
GTA
[SRA]
Identical group No.118342 (1 seq.)
>SRA1030923
SRR035087.349672
454 Sequencing (SRP001808)
102
186
+
Tyr
GTA
[SRA]
Identical group No.118358 (1 seq.)
>SRA1031385
SRR035087.422677
454 Sequencing (SRP001808)
406
320
-
Tyr
GTA
[SRA]
Identical group No.118372 (1 seq.)
>SRA1031743
SRR035087.479769
454 Sequencing (SRP001808)
356
442
+
Tyr
GTA
[SRA]
Identical group No.118375 (1 seq.)
>SRA1031887
SRR035087.505965
454 Sequencing (SRP001808)
185
99
-
Tyr
GTA
[SRA]
Identical group No.118417 (1 seq.)
>SRA1031090
SRR035087.371299
454 Sequencing (SRP001808)
272
189
-
Tyr
GTA
[SRA]
Identical group No.118418 (1 seq.)
>SRA1032281
SRR035087.594172
454 Sequencing (SRP001808)
109
192
+
Tyr
GTA
[SRA]
Identical group No.157476 (1 seq.)
>SRA1028822
SRR035087.14862
454 Sequencing (SRP001808)
239
154
-
Tyr
GTA
[SRA]
Identical group No.157485 (1 seq.)
>SRA1029184
SRR035087.88593
454 Sequencing (SRP001808)
168
253
+
Tyr
GTA
[SRA]
Identical group No.157490 (1 seq.)
>SRA1029551
SRR035087.144754
454 Sequencing (SRP001808)
240
325
+
Tyr
GTA
[SRA]
Identical group No.157502 (1 seq.)
>SRA1030457
SRR035087.281813
454 Sequencing (SRP001808)
6
91
+
Tyr
GTA
[SRA]
Identical group No.157507 (1 seq.)
>SRA1030561
SRR035087.296017
454 Sequencing (SRP001808)
165
250
+
Tyr
GTA
[SRA]
Identical group No.157510 (1 seq.)
>SRA1030726
SRR035087.321181
454 Sequencing (SRP001808)
379
464
+
Tyr
GTA
[SRA]
Identical group No.157512 (1 seq.)
>SRA1030784
SRR035087.331689
454 Sequencing (SRP001808)
285
370
+
Tyr
GTA
[SRA]
Identical group No.157524 (1 seq.)
>SRA1031369
SRR035087.420346
454 Sequencing (SRP001808)
137
52
-
Tyr
GTA
[SRA]
Identical group No.157533 (1 seq.)
>SRA1031947
SRR035087.517290
454 Sequencing (SRP001808)
214
129
-
Tyr
GTA
[SRA]
Identical group No.157534 (1 seq.)
>SRA1031992
SRR035087.526736
454 Sequencing (SRP001808)
320
237
-
Tyr
GTA
[SRA]
Identical group No.157540 (1 seq.)
>SRA1032326
SRR035087.606134
454 Sequencing (SRP001808)
93
175
+
Tyr
GTA
[SRA]
Identical group No.186065 (1 seq.)
>SRA1029069
SRR035087.68997
454 Sequencing (SRP001808)
303
219
-
Tyr
GTA
[SRA]
Identical group No.186067 (1 seq.)
>SRA1029188
SRR035087.89454
454 Sequencing (SRP001808)
221
305
+
Tyr
GTA
[SRA]
Identical group No.186095 (2 seq.)
>SRA1030830
SRR035087.336274
454 Sequencing (SRP001808)
235
151
-
Tyr
GTA
[SRA]
>SRA1032327
SRR035087.606631
454 Sequencing (SRP001808)
235
151
-
Tyr
GTA
[SRA]
Identical group No.186104 (1 seq.)
>SRA1031053
SRR035087.364921
454 Sequencing (SRP001808)
171
87
-
Tyr
GTA
[SRA]
Identical group No.186106 (1 seq.)
>SRA1031247
SRR035087.399549
454 Sequencing (SRP001808)
310
391
+
Tyr
GTA
[SRA]
Identical group No.186111 (1 seq.)
>SRA1031360
SRR035087.419765
454 Sequencing (SRP001808)
475
392
-
Tyr
GTA
[SRA]
Identical group No.186119 (1 seq.)
>SRA1031929
SRR035087.514218
454 Sequencing (SRP001808)
115
30
-
Tyr
GTA
[SRA]
Identical group No.186121 (1 seq.)
>SRA1032022
SRR035087.534211
454 Sequencing (SRP001808)
92
174
+
Tyr
GTA
[SRA]
Identical group No.186149 (1 seq.)
>SRA1030166
SRR035087.236207
454 Sequencing (SRP001808)
138
53
-
Tyr
GTA
[SRA]
Identical group No.219627 (1 seq.)
>SRA1029220
SRR035087.94185
454 Sequencing (SRP001808)
147
64
-
Tyr
GTA
[SRA]
Identical group No.219644 (2 seq.)
>SRA1031860
SRR035087.499752
454 Sequencing (SRP001808)
325
242
-
Tyr
GTA
[SRA]
>SRA1032356
SRR035087.611152
454 Sequencing (SRP001808)
323
242
-
Tyr
GTA
[SRA]
Identical group No.229251 (1 seq.)
>SRA1029128
SRR035087.78932
454 Sequencing (SRP001808)
33
115
+
Tyr
GTA
[SRA]
Identical group No.300393 (1 seq.)
>SRA1029740
SRR035087.173861
454 Sequencing (SRP001808)
379
454
+
Tyr
GTA
[SRA]
Identical group No.300538 (1 seq.)
>SRA1030558
SRR035087.295768
454 Sequencing (SRP001808)
280
354
+
Tyr
GTA
[SRA]
Identical group No.300632 (1 seq.)
>SRA1031174
SRR035087.385346
454 Sequencing (SRP001808)
201
128
-
Tyr
GTA
[SRA]
Identical group No.484269 (1 seq.)
>SRA1030222
SRR035087.245032
454 Sequencing (SRP001808)
248
320
+
Tyr
GTA
[SRA]
Identical group No.484427 (1 seq.)
>SRA1031379
SRR035087.421434
454 Sequencing (SRP001808)
310
237
-
Tyr
GTA
[SRA]
Identical group No.672344 (1 seq.)
>SRA1029614
SRR035087.151536
454 Sequencing (SRP001808)
374
302
-
Tyr
GTA
[SRA]
Identical group No.788326 (1 seq.)
>SRA1029749
SRR035087.175555
454 Sequencing (SRP001808)
158
230
+
Tyr
GTA
[SRA]
Identical group No.788336 (3 seq.)
>SRA1031312
SRR035087.410671
454 Sequencing (SRP001808)
346
273
-
Tyr
GTA
[SRA]
>SRA1032042
SRR035087.539809
454 Sequencing (SRP001808)
347
274
-
Tyr
GTA
[SRA]
>SRA1032375
SRR035087.616779
454 Sequencing (SRP001808)
346
273
-
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK