This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GTC
HIT:
45 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90619 (1 seq.)
>SRA1029389
SRR035087.120522
454 Sequencing (SRP001808)
308
223
-
Asp
GTC
[SRA]
Identical group No.233528 (1 seq.)
>SRA1031856
SRR035087.499305
454 Sequencing (SRP001808)
155
75
-
Asp
GTC
[SRA]
Identical group No.235647 (1 seq.)
>SRA1029456
SRR035087.129634
454 Sequencing (SRP001808)
118
194
+
Asp
GTC
[SRA]
Identical group No.235663 (1 seq.)
>SRA1031623
SRR035087.461588
454 Sequencing (SRP001808)
371
449
+
Asp
GTC
[SRA]
Identical group No.244473 (1 seq.)
>SRA1030046
SRR035087.220690
454 Sequencing (SRP001808)
251
328
+
Asp
GTC
[SRA]
Identical group No.244532 (1 seq.)
>SRA1031673
SRR035087.468548
454 Sequencing (SRP001808)
377
302
-
Asp
GTC
[SRA]
Identical group No.244543 (1 seq.)
>SRA1031805
SRR035087.492041
454 Sequencing (SRP001808)
169
246
+
Asp
GTC
[SRA]
Identical group No.244552 (1 seq.)
>SRA1032015
SRR035087.532722
454 Sequencing (SRP001808)
210
133
-
Asp
GTC
[SRA]
Identical group No.300294 (1 seq.)
>SRA1028920
SRR035087.37402
454 Sequencing (SRP001808)
290
214
-
Asp
GTC
[SRA]
Identical group No.300322 (1 seq.)
>SRA1029210
SRR035087.92258
454 Sequencing (SRP001808)
126
50
-
Asp
GTC
[SRA]
Identical group No.300328 (1 seq.)
>SRA1029250
SRR035087.97997
454 Sequencing (SRP001808)
284
208
-
Asp
GTC
[SRA]
Identical group No.300349 (1 seq.)
>SRA1029442
SRR035087.128017
454 Sequencing (SRP001808)
262
186
-
Asp
GTC
[SRA]
Identical group No.300427 (1 seq.)
>SRA1029929
SRR035087.203640
454 Sequencing (SRP001808)
313
389
+
Asp
GTC
[SRA]
Identical group No.300462 (1 seq.)
>SRA1030144
SRR035087.233254
454 Sequencing (SRP001808)
129
56
-
Asp
GTC
[SRA]
Identical group No.300491 (1 seq.)
>SRA1030305
SRR035087.259613
454 Sequencing (SRP001808)
145
69
-
Asp
GTC
[SRA]
Identical group No.300517 (1 seq.)
>SRA1030435
SRR035087.279504
454 Sequencing (SRP001808)
204
280
+
Asp
GTC
[SRA]
Identical group No.300558 (1 seq.)
>SRA1030712
SRR035087.317628
454 Sequencing (SRP001808)
407
331
-
Asp
GTC
[SRA]
Identical group No.300573 (2 seq.)
>SRA1030795
SRR035087.332603
454 Sequencing (SRP001808)
164
88
-
Asp
GTC
[SRA]
>SRA1031970
SRR035087.522496
454 Sequencing (SRP001808)
164
88
-
Asp
GTC
[SRA]
Identical group No.300671 (1 seq.)
>SRA1031383
SRR035087.421963
454 Sequencing (SRP001808)
124
48
-
Asp
GTC
[SRA]
Identical group No.300707 (1 seq.)
>SRA1031587
SRR035087.454712
454 Sequencing (SRP001808)
218
144
-
Asp
GTC
[SRA]
Identical group No.300726 (2 seq.)
>SRA1031716
SRR035087.476436
454 Sequencing (SRP001808)
134
210
+
Asp
GTC
[SRA]
>SRA1032254
SRR035087.588418
454 Sequencing (SRP001808)
134
210
+
Asp
GTC
[SRA]
Identical group No.300775 (1 seq.)
>SRA1032103
SRR035087.552978
454 Sequencing (SRP001808)
303
227
-
Asp
GTC
[SRA]
Identical group No.300787 (1 seq.)
>SRA1032170
SRR035087.567944
454 Sequencing (SRP001808)
223
147
-
Asp
GTC
[SRA]
Identical group No.300808 (1 seq.)
>SRA1032329
SRR035087.607000
454 Sequencing (SRP001808)
235
159
-
Asp
GTC
[SRA]
Identical group No.301006 (1 seq.)
>SRA1032097
SRR035087.551197
454 Sequencing (SRP001808)
366
439
+
Asp
GTC
[SRA]
Identical group No.484048 (1 seq.)
>SRA1028866
SRR035087.25620
454 Sequencing (SRP001808)
314
387
+
Asp
GTC
[SRA]
Identical group No.484101 (1 seq.)
>SRA1029154
SRR035087.83719
454 Sequencing (SRP001808)
146
220
+
Asp
GTC
[SRA]
Identical group No.484156 (1 seq.)
>SRA1029485
SRR035087.135081
454 Sequencing (SRP001808)
165
240
+
Asp
GTC
[SRA]
Identical group No.672312 (1 seq.)
>SRA1029340
SRR035087.111450
454 Sequencing (SRP001808)
391
465
+
Asp
GTC
[SRA]
Identical group No.672372 (1 seq.)
>SRA1029862
SRR035087.193721
454 Sequencing (SRP001808)
163
90
-
Asp
GTC
[SRA]
Identical group No.672397 (1 seq.)
>SRA1030059
SRR035087.222154
454 Sequencing (SRP001808)
41
112
+
Asp
GTC
[SRA]
Identical group No.672403 (1 seq.)
>SRA1030109
SRR035087.228590
454 Sequencing (SRP001808)
100
27
-
Asp
GTC
[SRA]
Identical group No.672559 (1 seq.)
>SRA1031412
SRR035087.426032
454 Sequencing (SRP001808)
97
171
+
Asp
GTC
[SRA]
Identical group No.672789 (1 seq.)
>SRA1029782
SRR035087.180318
454 Sequencing (SRP001808)
189
115
-
Asp
GTC
[SRA]
Identical group No.788058 (1 seq.)
>SRA1029608
SRR035087.150678
454 Sequencing (SRP001808)
104
32
-
Asp
GTC
[SRA]
Identical group No.788063 (1 seq.)
>SRA1029670
SRR035087.161045
454 Sequencing (SRP001808)
428
501
+
Asp
GTC
[SRA]
Identical group No.788086 (1 seq.)
>SRA1030011
SRR035087.216048
454 Sequencing (SRP001808)
360
289
-
Asp
GTC
[SRA]
Identical group No.788090 (1 seq.)
>SRA1030091
SRR035087.226570
454 Sequencing (SRP001808)
350
422
+
Asp
GTC
[SRA]
Identical group No.788097 (1 seq.)
>SRA1030193
SRR035087.240160
454 Sequencing (SRP001808)
273
201
-
Asp
GTC
[SRA]
Identical group No.788098 (1 seq.)
>SRA1030217
SRR035087.243923
454 Sequencing (SRP001808)
277
204
-
Asp
GTC
[SRA]
Identical group No.788102 (1 seq.)
>SRA1030238
SRR035087.247480
454 Sequencing (SRP001808)
134
61
-
Asp
GTC
[SRA]
Identical group No.788110 (1 seq.)
>SRA1030311
SRR035087.260527
454 Sequencing (SRP001808)
87
16
-
Asp
GTC
[SRA]
Identical group No.788112 (1 seq.)
>SRA1030346
SRR035087.265837
454 Sequencing (SRP001808)
391
319
-
Asp
GTC
[SRA]
Identical group No.788151 (1 seq.)
>SRA1031086
SRR035087.370310
454 Sequencing (SRP001808)
103
31
-
Asp
GTC
[SRA]
Identical group No.788174 (1 seq.)
>SRA1031390
SRR035087.422952
454 Sequencing (SRP001808)
142
215
+
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK