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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GTG
HIT:
62 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49615 (1 seq.)
>SRA1031689
SRR035087.471849
454 Sequencing (SRP001808)
202
291
+
His
GTG
[SRA]
Identical group No.74757 (1 seq.)
>SRA1032239
SRR035087.584370
454 Sequencing (SRP001808)
102
15
-
His
GTG
[SRA]
Identical group No.90544 (1 seq.)
>SRA1029564
SRR035087.146277
454 Sequencing (SRP001808)
168
82
-
His
GTG
[SRA]
Identical group No.235658 (1 seq.)
>SRA1030920
SRR035087.348659
454 Sequencing (SRP001808)
245
322
+
His
GTG
[SRA]
Identical group No.235661 (1 seq.)
>SRA1031282
SRR035087.406235
454 Sequencing (SRP001808)
144
66
-
His
GTG
[SRA]
Identical group No.244609 (1 seq.)
>SRA1030621
SRR035087.306079
454 Sequencing (SRP001808)
394
468
+
His
GTG
[SRA]
Identical group No.300309 (1 seq.)
>SRA1029052
SRR035087.65738
454 Sequencing (SRP001808)
267
342
+
His
GTG
[SRA]
Identical group No.300324 (1 seq.)
>SRA1029232
SRR035087.94884
454 Sequencing (SRP001808)
151
75
-
His
GTG
[SRA]
Identical group No.300335 (1 seq.)
>SRA1029312
SRR035087.107684
454 Sequencing (SRP001808)
191
116
-
His
GTG
[SRA]
Identical group No.300342 (1 seq.)
>SRA1029375
SRR035087.118493
454 Sequencing (SRP001808)
412
488
+
His
GTG
[SRA]
Identical group No.300350 (1 seq.)
>SRA1029462
SRR035087.130974
454 Sequencing (SRP001808)
299
224
-
His
GTG
[SRA]
Identical group No.300458 (1 seq.)
>SRA1030134
SRR035087.232027
454 Sequencing (SRP001808)
456
380
-
His
GTG
[SRA]
Identical group No.300536 (1 seq.)
>SRA1030547
SRR035087.294083
454 Sequencing (SRP001808)
325
401
+
His
GTG
[SRA]
Identical group No.300555 (1 seq.)
>SRA1030674
SRR035087.312165
454 Sequencing (SRP001808)
353
429
+
His
GTG
[SRA]
Identical group No.300574 (1 seq.)
>SRA1030799
SRR035087.333177
454 Sequencing (SRP001808)
101
26
-
His
GTG
[SRA]
Identical group No.300731 (1 seq.)
>SRA1031725
SRR035087.477636
454 Sequencing (SRP001808)
127
51
-
His
GTG
[SRA]
Identical group No.300734 (1 seq.)
>SRA1031757
SRR035087.482541
454 Sequencing (SRP001808)
169
93
-
His
GTG
[SRA]
Identical group No.300748 (1 seq.)
>SRA1031921
SRR035087.513000
454 Sequencing (SRP001808)
429
353
-
His
GTG
[SRA]
Identical group No.300757 (1 seq.)
>SRA1031968
SRR035087.522254
454 Sequencing (SRP001808)
480
403
-
His
GTG
[SRA]
Identical group No.300772 (2 seq.)
>SRA1032091
SRR035087.550828
454 Sequencing (SRP001808)
122
47
-
His
GTG
[SRA]
>SRA1032160
SRR035087.565514
454 Sequencing (SRP001808)
122
47
-
His
GTG
[SRA]
Identical group No.300774 (1 seq.)
>SRA1032096
SRR035087.551197
454 Sequencing (SRP001808)
287
363
+
His
GTG
[SRA]
Identical group No.300803 (1 seq.)
>SRA1032273
SRR035087.592751
454 Sequencing (SRP001808)
96
169
+
His
GTG
[SRA]
Identical group No.484050 (1 seq.)
>SRA1028877
SRR035087.28748
454 Sequencing (SRP001808)
192
119
-
His
GTG
[SRA]
Identical group No.484115 (1 seq.)
>SRA1029233
SRR035087.95032
454 Sequencing (SRP001808)
216
289
+
His
GTG
[SRA]
Identical group No.484117 (1 seq.)
>SRA1029248
SRR035087.97816
454 Sequencing (SRP001808)
107
33
-
His
GTG
[SRA]
Identical group No.484158 (1 seq.)
>SRA1029491
SRR035087.136300
454 Sequencing (SRP001808)
99
24
-
His
GTG
[SRA]
Identical group No.484217 (1 seq.)
>SRA1029886
SRR035087.196882
454 Sequencing (SRP001808)
143
68
-
His
GTG
[SRA]
Identical group No.484229 (1 seq.)
>SRA1029955
SRR035087.208294
454 Sequencing (SRP001808)
441
367
-
His
GTG
[SRA]
Identical group No.484244 (1 seq.)
>SRA1030056
SRR035087.222000
454 Sequencing (SRP001808)
67
140
+
His
GTG
[SRA]
Identical group No.484397 (1 seq.)
>SRA1031091
SRR035087.371299
454 Sequencing (SRP001808)
130
57
-
His
GTG
[SRA]
Identical group No.484445 (1 seq.)
>SRA1031484
SRR035087.437350
454 Sequencing (SRP001808)
169
95
-
His
GTG
[SRA]
Identical group No.484470 (1 seq.)
>SRA1031638
SRR035087.462962
454 Sequencing (SRP001808)
221
147
-
His
GTG
[SRA]
Identical group No.484483 (1 seq.)
>SRA1031746
SRR035087.480983
454 Sequencing (SRP001808)
109
37
-
His
GTG
[SRA]
Identical group No.484507 (1 seq.)
>SRA1031914
SRR035087.511178
454 Sequencing (SRP001808)
92
165
+
His
GTG
[SRA]
Identical group No.484519 (1 seq.)
>SRA1031990
SRR035087.526461
454 Sequencing (SRP001808)
299
225
-
His
GTG
[SRA]
Identical group No.484541 (1 seq.)
>SRA1032129
SRR035087.558863
454 Sequencing (SRP001808)
167
242
+
His
GTG
[SRA]
Identical group No.484570 (1 seq.)
>SRA1032404
SRR035087.622930
454 Sequencing (SRP001808)
101
174
+
His
GTG
[SRA]
Identical group No.672295 (1 seq.)
>SRA1029208
SRR035087.92032
454 Sequencing (SRP001808)
45
116
+
His
GTG
[SRA]
Identical group No.672359 (1 seq.)
>SRA1029717
SRR035087.169777
454 Sequencing (SRP001808)
82
8
-
His
GTG
[SRA]
Identical group No.672382 (1 seq.)
>SRA1029940
SRR035087.204932
454 Sequencing (SRP001808)
239
312
+
His
GTG
[SRA]
Identical group No.672439 (1 seq.)
>SRA1030370
SRR035087.269018
454 Sequencing (SRP001808)
389
317
-
His
GTG
[SRA]
Identical group No.672477 (1 seq.)
>SRA1030748
SRR035087.325628
454 Sequencing (SRP001808)
428
354
-
His
GTG
[SRA]
Identical group No.672499 (1 seq.)
>SRA1030961
SRR035087.354953
454 Sequencing (SRP001808)
222
148
-
His
GTG
[SRA]
Identical group No.672555 (1 seq.)
>SRA1031386
SRR035087.422677
454 Sequencing (SRP001808)
313
239
-
His
GTG
[SRA]
Identical group No.672614 (1 seq.)
>SRA1031928
SRR035087.514202
454 Sequencing (SRP001808)
171
98
-
His
GTG
[SRA]
Identical group No.672621 (1 seq.)
>SRA1031964
SRR035087.521684
454 Sequencing (SRP001808)
260
186
-
His
GTG
[SRA]
Identical group No.672787 (1 seq.)
>SRA1029211
SRR035087.92560
454 Sequencing (SRP001808)
74
1
-
His
GTG
[SRA]
Identical group No.672799 (1 seq.)
>SRA1031926
SRR035087.514094
454 Sequencing (SRP001808)
108
34
-
His
GTG
[SRA]
Identical group No.788013 (1 seq.)
>SRA1029017
SRR035087.58868
454 Sequencing (SRP001808)
344
271
-
His
GTG
[SRA]
Identical group No.788025 (1 seq.)
>SRA1029155
SRR035087.83991
454 Sequencing (SRP001808)
193
121
-
His
GTG
[SRA]
Identical group No.788029 (1 seq.)
>SRA1029190
SRR035087.89799
454 Sequencing (SRP001808)
210
137
-
His
GTG
[SRA]
Identical group No.788054 (1 seq.)
>SRA1029518
SRR035087.140191
454 Sequencing (SRP001808)
206
279
+
His
GTG
[SRA]
Identical group No.788075 (1 seq.)
>SRA1029811
SRR035087.185812
454 Sequencing (SRP001808)
420
348
-
His
GTG
[SRA]
Identical group No.788141 (1 seq.)
>SRA1030988
SRR035087.357453
454 Sequencing (SRP001808)
118
45
-
His
GTG
[SRA]
Identical group No.788176 (1 seq.)
>SRA1031405
SRR035087.424556
454 Sequencing (SRP001808)
143
70
-
His
GTG
[SRA]
Identical group No.788189 (1 seq.)
>SRA1031657
SRR035087.466066
454 Sequencing (SRP001808)
313
386
+
His
GTG
[SRA]
Identical group No.788194 (1 seq.)
>SRA1031797
SRR035087.490799
454 Sequencing (SRP001808)
45
118
+
His
GTG
[SRA]
Identical group No.788201 (1 seq.)
>SRA1031870
SRR035087.501862
454 Sequencing (SRP001808)
97
26
-
His
GTG
[SRA]
Identical group No.788208 (1 seq.)
>SRA1031979
SRR035087.524412
454 Sequencing (SRP001808)
280
352
+
His
GTG
[SRA]
Identical group No.788212 (1 seq.)
>SRA1032037
SRR035087.539129
454 Sequencing (SRP001808)
287
216
-
His
GTG
[SRA]
Identical group No.788239 (1 seq.)
>SRA1032392
SRR035087.620148
454 Sequencing (SRP001808)
83
12
-
His
GTG
[SRA]
Identical group No.788323 (1 seq.)
>SRA1029139
SRR035087.80596
454 Sequencing (SRP001808)
226
297
+
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK