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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TAA
HIT:
58 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49602 (1 seq.)
>SRA1030688
SRR035087.314750
454 Sequencing (SRP001808)
114
28
-
Leu
TAA
[SRA]
Identical group No.49607 (1 seq.)
>SRA1030986
SRR035087.357453
454 Sequencing (SRP001808)
338
250
-
Leu
TAA
[SRA]
Identical group No.49608 (1 seq.)
>SRA1031258
SRR035087.401189
454 Sequencing (SRP001808)
285
198
-
Leu
TAA
[SRA]
Identical group No.74729 (1 seq.)
>SRA1029674
SRR035087.162238
454 Sequencing (SRP001808)
269
181
-
Leu
TAA
[SRA]
Identical group No.74738 (1 seq.)
>SRA1030564
SRR035087.296332
454 Sequencing (SRP001808)
114
201
+
Leu
TAA
[SRA]
Identical group No.74739 (1 seq.)
>SRA1030566
SRR035087.296520
454 Sequencing (SRP001808)
363
448
+
Leu
TAA
[SRA]
Identical group No.90530 (1 seq.)
>SRA1028981
SRR035087.51943
454 Sequencing (SRP001808)
221
137
-
Leu
TAA
[SRA]
Identical group No.90531 (1 seq.)
>SRA1028993
SRR035087.54798
454 Sequencing (SRP001808)
173
88
-
Leu
TAA
[SRA]
Identical group No.90536 (1 seq.)
>SRA1029176
SRR035087.87655
454 Sequencing (SRP001808)
335
249
-
Leu
TAA
[SRA]
Identical group No.90541 (1 seq.)
>SRA1029440
SRR035087.127475
454 Sequencing (SRP001808)
83
172
+
Leu
TAA
[SRA]
Identical group No.90549 (1 seq.)
>SRA1029711
SRR035087.168748
454 Sequencing (SRP001808)
245
158
-
Leu
TAA
[SRA]
Identical group No.90556 (1 seq.)
>SRA1029989
SRR035087.212497
454 Sequencing (SRP001808)
224
140
-
Leu
TAA
[SRA]
Identical group No.90558 (1 seq.)
>SRA1030065
SRR035087.222725
454 Sequencing (SRP001808)
355
442
+
Leu
TAA
[SRA]
Identical group No.90579 (1 seq.)
>SRA1031063
SRR035087.366618
454 Sequencing (SRP001808)
42
126
+
Leu
TAA
[SRA]
Identical group No.90585 (1 seq.)
>SRA1031286
SRR035087.406612
454 Sequencing (SRP001808)
170
257
+
Leu
TAA
[SRA]
Identical group No.90599 (1 seq.)
>SRA1031989
SRR035087.526461
454 Sequencing (SRP001808)
400
316
-
Leu
TAA
[SRA]
Identical group No.90606 (1 seq.)
>SRA1032309
SRR035087.600233
454 Sequencing (SRP001808)
333
420
+
Leu
TAA
[SRA]
Identical group No.118286 (1 seq.)
>SRA1028820
SRR035087.14798
454 Sequencing (SRP001808)
112
27
-
Leu
TAA
[SRA]
Identical group No.118296 (1 seq.)
>SRA1029357
SRR035087.114980
454 Sequencing (SRP001808)
93
179
+
Leu
TAA
[SRA]
Identical group No.118297 (1 seq.)
>SRA1029358
SRR035087.115140
454 Sequencing (SRP001808)
88
2
-
Leu
TAA
[SRA]
Identical group No.118299 (1 seq.)
>SRA1029391
SRR035087.120641
454 Sequencing (SRP001808)
218
132
-
Leu
TAA
[SRA]
Identical group No.118307 (1 seq.)
>SRA1029687
SRR035087.164017
454 Sequencing (SRP001808)
108
22
-
Leu
TAA
[SRA]
Identical group No.118309 (1 seq.)
>SRA1029738
SRR035087.173431
454 Sequencing (SRP001808)
226
142
-
Leu
TAA
[SRA]
Identical group No.118316 (1 seq.)
>SRA1029913
SRR035087.201053
454 Sequencing (SRP001808)
262
177
-
Leu
TAA
[SRA]
Identical group No.118324 (1 seq.)
>SRA1030039
SRR035087.220041
454 Sequencing (SRP001808)
145
61
-
Leu
TAA
[SRA]
Identical group No.118329 (1 seq.)
>SRA1030246
SRR035087.249051
454 Sequencing (SRP001808)
100
185
+
Leu
TAA
[SRA]
Identical group No.118340 (1 seq.)
>SRA1030874
SRR035087.341835
454 Sequencing (SRP001808)
209
295
+
Leu
TAA
[SRA]
Identical group No.118346 (1 seq.)
>SRA1031058
SRR035087.365383
454 Sequencing (SRP001808)
120
34
-
Leu
TAA
[SRA]
Identical group No.118350 (1 seq.)
>SRA1031149
SRR035087.379960
454 Sequencing (SRP001808)
263
347
+
Leu
TAA
[SRA]
Identical group No.118353 (1 seq.)
>SRA1031211
SRR035087.392011
454 Sequencing (SRP001808)
299
384
+
Leu
TAA
[SRA]
Identical group No.118360 (1 seq.)
>SRA1031443
SRR035087.430869
454 Sequencing (SRP001808)
219
305
+
Leu
TAA
[SRA]
Identical group No.118371 (1 seq.)
>SRA1031650
SRR035087.464441
454 Sequencing (SRP001808)
285
200
-
Leu
TAA
[SRA]
Identical group No.118376 (1 seq.)
>SRA1031898
SRR035087.508588
454 Sequencing (SRP001808)
259
173
-
Leu
TAA
[SRA]
Identical group No.118380 (1 seq.)
>SRA1031938
SRR035087.515733
454 Sequencing (SRP001808)
291
377
+
Leu
TAA
[SRA]
Identical group No.118381 (1 seq.)
>SRA1031948
SRR035087.517924
454 Sequencing (SRP001808)
481
395
-
Leu
TAA
[SRA]
Identical group No.118387 (1 seq.)
>SRA1032133
SRR035087.559361
454 Sequencing (SRP001808)
259
175
-
Leu
TAA
[SRA]
Identical group No.157480 (1 seq.)
>SRA1029059
SRR035087.67688
454 Sequencing (SRP001808)
293
378
+
Leu
TAA
[SRA]
Identical group No.157487 (1 seq.)
>SRA1029225
SRR035087.94642
454 Sequencing (SRP001808)
267
182
-
Leu
TAA
[SRA]
Identical group No.157499 (1 seq.)
>SRA1030359
SRR035087.267597
454 Sequencing (SRP001808)
236
153
-
Leu
TAA
[SRA]
Identical group No.157501 (1 seq.)
>SRA1030446
SRR035087.280576
454 Sequencing (SRP001808)
346
431
+
Leu
TAA
[SRA]
Identical group No.157506 (1 seq.)
>SRA1030553
SRR035087.294816
454 Sequencing (SRP001808)
380
295
-
Leu
TAA
[SRA]
Identical group No.157520 (1 seq.)
>SRA1031232
SRR035087.395836
454 Sequencing (SRP001808)
390
305
-
Leu
TAA
[SRA]
Identical group No.157526 (1 seq.)
>SRA1031602
SRR035087.458464
454 Sequencing (SRP001808)
460
375
-
Leu
TAA
[SRA]
Identical group No.157530 (1 seq.)
>SRA1031728
SRR035087.477756
454 Sequencing (SRP001808)
125
42
-
Leu
TAA
[SRA]
Identical group No.157565 (1 seq.)
>SRA1028900
SRR035087.34436
454 Sequencing (SRP001808)
121
206
+
Leu
TAA
[SRA]
Identical group No.186072 (1 seq.)
>SRA1029469
SRR035087.132181
454 Sequencing (SRP001808)
135
219
+
Leu
TAA
[SRA]
Identical group No.186073 (1 seq.)
>SRA1029527
SRR035087.141865
454 Sequencing (SRP001808)
226
309
+
Leu
TAA
[SRA]
Identical group No.186085 (1 seq.)
>SRA1030393
SRR035087.273457
454 Sequencing (SRP001808)
179
95
-
Leu
TAA
[SRA]
Identical group No.219639 (1 seq.)
>SRA1031291
SRR035087.406739
454 Sequencing (SRP001808)
102
185
+
Leu
TAA
[SRA]
Identical group No.229253 (1 seq.)
>SRA1030579
SRR035087.299357
454 Sequencing (SRP001808)
281
201
-
Leu
TAA
[SRA]
Identical group No.232646 (1 seq.)
>SRA1030295
SRR035087.257528
454 Sequencing (SRP001808)
206
125
-
Leu
TAA
[SRA]
Identical group No.235654 (1 seq.)
>SRA1030716
SRR035087.319152
454 Sequencing (SRP001808)
341
266
-
Leu
TAA
[SRA]
Identical group No.244474 (1 seq.)
>SRA1030050
SRR035087.220795
454 Sequencing (SRP001808)
110
187
+
Leu
TAA
[SRA]
Identical group No.244546 (1 seq.)
>SRA1031867
SRR035087.501370
454 Sequencing (SRP001808)
264
340
+
Leu
TAA
[SRA]
Identical group No.300627 (1 seq.)
>SRA1031144
SRR035087.379908
454 Sequencing (SRP001808)
71
144
+
Leu
TAA
[SRA]
Identical group No.484279 (1 seq.)
>SRA1030275
SRR035087.254759
454 Sequencing (SRP001808)
290
215
-
Leu
TAA
[SRA]
Identical group No.484299 (1 seq.)
>SRA1030425
SRR035087.278580
454 Sequencing (SRP001808)
67
142
+
Leu
TAA
[SRA]
Identical group No.484471 (1 seq.)
>SRA1031643
SRR035087.463883
454 Sequencing (SRP001808)
166
241
+
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK