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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TAC
HIT:
37 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90564 (1 seq.)
>SRA1030440
SRR035087.279808
454 Sequencing (SRP001808)
380
295
-
Val
TAC
[SRA]
Identical group No.235640 (1 seq.)
>SRA1028803
SRR035087.10735
454 Sequencing (SRP001808)
189
111
-
Val
TAC
[SRA]
Identical group No.235664 (1 seq.)
>SRA1031694
SRR035087.473187
454 Sequencing (SRP001808)
253
175
-
Val
TAC
[SRA]
Identical group No.244491 (1 seq.)
>SRA1030471
SRR035087.283497
454 Sequencing (SRP001808)
452
377
-
Val
TAC
[SRA]
Identical group No.244520 (1 seq.)
>SRA1031324
SRR035087.412966
454 Sequencing (SRP001808)
241
166
-
Val
TAC
[SRA]
Identical group No.300280 (1 seq.)
>SRA1028823
SRR035087.15295
454 Sequencing (SRP001808)
436
363
-
Val
TAC
[SRA]
Identical group No.300512 (1 seq.)
>SRA1030402
SRR035087.275268
454 Sequencing (SRP001808)
78
2
-
Val
TAC
[SRA]
Identical group No.300513 (1 seq.)
>SRA1030405
SRR035087.275853
454 Sequencing (SRP001808)
50
124
+
Val
TAC
[SRA]
Identical group No.300521 (2 seq.)
>SRA1030454
SRR035087.281337
454 Sequencing (SRP001808)
122
198
+
Val
TAC
[SRA]
>SRA1031192
SRR035087.388713
454 Sequencing (SRP001808)
122
198
+
Val
TAC
[SRA]
Identical group No.300530 (1 seq.)
>SRA1030509
SRR035087.289129
454 Sequencing (SRP001808)
245
171
-
Val
TAC
[SRA]
Identical group No.300543 (1 seq.)
>SRA1030578
SRR035087.299090
454 Sequencing (SRP001808)
327
403
+
Val
TAC
[SRA]
Identical group No.300548 (1 seq.)
>SRA1030617
SRR035087.305460
454 Sequencing (SRP001808)
492
416
-
Val
TAC
[SRA]
Identical group No.300581 (1 seq.)
>SRA1030857
SRR035087.340195
454 Sequencing (SRP001808)
231
307
+
Val
TAC
[SRA]
Identical group No.300742 (1 seq.)
>SRA1031869
SRR035087.501594
454 Sequencing (SRP001808)
140
66
-
Val
TAC
[SRA]
Identical group No.300744 (1 seq.)
>SRA1031879
SRR035087.503213
454 Sequencing (SRP001808)
431
356
-
Val
TAC
[SRA]
Identical group No.300765 (1 seq.)
>SRA1032054
SRR035087.541066
454 Sequencing (SRP001808)
101
28
-
Val
TAC
[SRA]
Identical group No.300792 (1 seq.)
>SRA1032200
SRR035087.574256
454 Sequencing (SRP001808)
112
36
-
Val
TAC
[SRA]
Identical group No.484055 (1 seq.)
>SRA1028885
SRR035087.30668
454 Sequencing (SRP001808)
436
508
+
Val
TAC
[SRA]
Identical group No.484074 (1 seq.)
>SRA1029005
SRR035087.57832
454 Sequencing (SRP001808)
350
277
-
Val
TAC
[SRA]
Identical group No.484075 (1 seq.)
>SRA1029007
SRR035087.57920
454 Sequencing (SRP001808)
269
344
+
Val
TAC
[SRA]
Identical group No.484205 (1 seq.)
>SRA1029818
SRR035087.187258
454 Sequencing (SRP001808)
393
465
+
Val
TAC
[SRA]
Identical group No.484313 (1 seq.)
>SRA1030525
SRR035087.290360
454 Sequencing (SRP001808)
292
367
+
Val
TAC
[SRA]
Identical group No.484379 (1 seq.)
>SRA1030938
SRR035087.352588
454 Sequencing (SRP001808)
501
427
-
Val
TAC
[SRA]
Identical group No.484413 (1 seq.)
>SRA1031229
SRR035087.395801
454 Sequencing (SRP001808)
331
406
+
Val
TAC
[SRA]
Identical group No.484416 (1 seq.)
>SRA1031236
SRR035087.396574
454 Sequencing (SRP001808)
211
136
-
Val
TAC
[SRA]
Identical group No.484429 (1 seq.)
>SRA1031382
SRR035087.421963
454 Sequencing (SRP001808)
208
133
-
Val
TAC
[SRA]
Identical group No.484441 (1 seq.)
>SRA1031470
SRR035087.435466
454 Sequencing (SRP001808)
376
451
+
Val
TAC
[SRA]
Identical group No.484453 (1 seq.)
>SRA1031536
SRR035087.446232
454 Sequencing (SRP001808)
412
487
+
Val
TAC
[SRA]
Identical group No.672366 (1 seq.)
>SRA1029799
SRR035087.182811
454 Sequencing (SRP001808)
293
364
+
Val
TAC
[SRA]
Identical group No.672388 (1 seq.)
>SRA1030003
SRR035087.214926
454 Sequencing (SRP001808)
418
345
-
Val
TAC
[SRA]
Identical group No.672401 (1 seq.)
>SRA1030089
SRR035087.226570
454 Sequencing (SRP001808)
201
274
+
Val
TAC
[SRA]
Identical group No.672453 (1 seq.)
>SRA1030475
SRR035087.284044
454 Sequencing (SRP001808)
159
231
+
Val
TAC
[SRA]
Identical group No.672467 (1 seq.)
>SRA1030590
SRR035087.301210
454 Sequencing (SRP001808)
151
225
+
Val
TAC
[SRA]
Identical group No.672574 (1 seq.)
>SRA1031548
SRR035087.447909
454 Sequencing (SRP001808)
312
383
+
Val
TAC
[SRA]
Identical group No.672788 (1 seq.)
>SRA1029300
SRR035087.105534
454 Sequencing (SRP001808)
186
115
-
Val
TAC
[SRA]
Identical group No.788011 (1 seq.)
>SRA1028990
SRR035087.54570
454 Sequencing (SRP001808)
221
294
+
Val
TAC
[SRA]
Identical group No.788149 (1 seq.)
>SRA1031067
SRR035087.367810
454 Sequencing (SRP001808)
45
115
+
Val
TAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK