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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TAT
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235659 (1 seq.)
>SRA1031014
SRR035087.360700
454 Sequencing (SRP001808)
216
291
+
Ile
TAT
[SRA]
Identical group No.244424 (1 seq.)
>SRA1028845
SRR035087.19612
454 Sequencing (SRP001808)
301
375
+
Ile
TAT
[SRA]
Identical group No.300421 (1 seq.)
>SRA1029880
SRR035087.195680
454 Sequencing (SRP001808)
85
9
-
Ile
TAT
[SRA]
Identical group No.300423 (1 seq.)
>SRA1029904
SRR035087.199100
454 Sequencing (SRP001808)
521
445
-
Ile
TAT
[SRA]
Identical group No.300439 (1 seq.)
>SRA1030007
SRR035087.215369
454 Sequencing (SRP001808)
271
197
-
Ile
TAT
[SRA]
Identical group No.300634 (1 seq.)
>SRA1031188
SRR035087.388539
454 Sequencing (SRP001808)
321
247
-
Ile
TAT
[SRA]
Identical group No.300699 (1 seq.)
>SRA1031555
SRR035087.449384
454 Sequencing (SRP001808)
213
286
+
Ile
TAT
[SRA]
Identical group No.300723 (1 seq.)
>SRA1031700
SRR035087.473774
454 Sequencing (SRP001808)
239
312
+
Ile
TAT
[SRA]
Identical group No.300756 (1 seq.)
>SRA1031961
SRR035087.521268
454 Sequencing (SRP001808)
296
220
-
Ile
TAT
[SRA]
Identical group No.484124 (1 seq.)
>SRA1029306
SRR035087.105835
454 Sequencing (SRP001808)
194
119
-
Ile
TAT
[SRA]
Identical group No.484310 (1 seq.)
>SRA1030516
SRR035087.290081
454 Sequencing (SRP001808)
239
164
-
Ile
TAT
[SRA]
Identical group No.484405 (1 seq.)
>SRA1031181
SRR035087.387072
454 Sequencing (SRP001808)
310
237
-
Ile
TAT
[SRA]
Identical group No.484481 (1 seq.)
>SRA1031741
SRR035087.479498
454 Sequencing (SRP001808)
135
210
+
Ile
TAT
[SRA]
Identical group No.672243 (1 seq.)
>SRA1028842
SRR035087.19045
454 Sequencing (SRP001808)
294
220
-
Ile
TAT
[SRA]
Identical group No.672255 (1 seq.)
>SRA1028927
SRR035087.38082
454 Sequencing (SRP001808)
176
247
+
Ile
TAT
[SRA]
Identical group No.672264 (1 seq.)
>SRA1028982
SRR035087.51986
454 Sequencing (SRP001808)
71
-1
-
Ile
TAT
[SRA]
Identical group No.672290 (1 seq.)
>SRA1029171
SRR035087.86710
454 Sequencing (SRP001808)
189
261
+
Ile
TAT
[SRA]
Identical group No.672301 (1 seq.)
>SRA1029265
SRR035087.99664
454 Sequencing (SRP001808)
76
2
-
Ile
TAT
[SRA]
Identical group No.672436 (1 seq.)
>SRA1030349
SRR035087.265837
454 Sequencing (SRP001808)
87
13
-
Ile
TAT
[SRA]
Identical group No.672456 (1 seq.)
>SRA1030504
SRR035087.288450
454 Sequencing (SRP001808)
116
44
-
Ile
TAT
[SRA]
Identical group No.672501 (1 seq.)
>SRA1030978
SRR035087.356917
454 Sequencing (SRP001808)
233
307
+
Ile
TAT
[SRA]
Identical group No.672534 (1 seq.)
>SRA1031197
SRR035087.390170
454 Sequencing (SRP001808)
264
335
+
Ile
TAT
[SRA]
Identical group No.787998 (2 seq.)
>SRA1028835
SRR035087.16996
454 Sequencing (SRP001808)
124
194
+
Ile
TAT
[SRA]
>SRA1028979
SRR035087.51261
454 Sequencing (SRP001808)
124
194
+
Ile
TAT
[SRA]
Identical group No.788045 (2 seq.)
>SRA1029388
SRR035087.120467
454 Sequencing (SRP001808)
107
34
-
Ile
TAT
[SRA]
>SRA1030051
SRR035087.220812
454 Sequencing (SRP001808)
107
34
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK