This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TCC
HIT:
50 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300501 (1 seq.)
>SRA1030369
SRR035087.268630
454 Sequencing (SRP001808)
88
164
+
Gly
TCC
[SRA]
Identical group No.300687 (1 seq.)
>SRA1031481
SRR035087.437161
454 Sequencing (SRP001808)
299
375
+
Gly
TCC
[SRA]
Identical group No.300696 (1 seq.)
>SRA1031545
SRR035087.447672
454 Sequencing (SRP001808)
253
329
+
Gly
TCC
[SRA]
Identical group No.300743 (1 seq.)
>SRA1031875
SRR035087.502524
454 Sequencing (SRP001808)
154
228
+
Gly
TCC
[SRA]
Identical group No.301005 (1 seq.)
>SRA1031373
SRR035087.420717
454 Sequencing (SRP001808)
82
6
-
Gly
TCC
[SRA]
Identical group No.484271 (1 seq.)
>SRA1030229
SRR035087.245929
454 Sequencing (SRP001808)
214
139
-
Gly
TCC
[SRA]
Identical group No.484317 (1 seq.)
>SRA1030582
SRR035087.299834
454 Sequencing (SRP001808)
3
78
+
Gly
TCC
[SRA]
Identical group No.484360 (2 seq.)
>SRA1030831
SRR035087.336274
454 Sequencing (SRP001808)
146
71
-
Gly
TCC
[SRA]
>SRA1032328
SRR035087.606631
454 Sequencing (SRP001808)
146
71
-
Gly
TCC
[SRA]
Identical group No.484404 (1 seq.)
>SRA1031180
SRR035087.386243
454 Sequencing (SRP001808)
173
100
-
Gly
TCC
[SRA]
Identical group No.484450 (1 seq.)
>SRA1031512
SRR035087.441182
454 Sequencing (SRP001808)
187
260
+
Gly
TCC
[SRA]
Identical group No.484456 (1 seq.)
>SRA1031558
SRR035087.449694
454 Sequencing (SRP001808)
138
210
+
Gly
TCC
[SRA]
Identical group No.484473 (1 seq.)
>SRA1031653
SRR035087.464877
454 Sequencing (SRP001808)
105
180
+
Gly
TCC
[SRA]
Identical group No.484498 (1 seq.)
>SRA1031842
SRR035087.498359
454 Sequencing (SRP001808)
69
141
+
Gly
TCC
[SRA]
Identical group No.484536 (1 seq.)
>SRA1032095
SRR035087.551197
454 Sequencing (SRP001808)
208
280
+
Gly
TCC
[SRA]
Identical group No.672236 (1 seq.)
>SRA1028793
SRR035087.8328
454 Sequencing (SRP001808)
217
143
-
Gly
TCC
[SRA]
Identical group No.672289 (1 seq.)
>SRA1029166
SRR035087.85847
454 Sequencing (SRP001808)
341
415
+
Gly
TCC
[SRA]
Identical group No.672300 (1 seq.)
>SRA1029261
SRR035087.99078
454 Sequencing (SRP001808)
190
116
-
Gly
TCC
[SRA]
Identical group No.672323 (1 seq.)
>SRA1029459
SRR035087.130618
454 Sequencing (SRP001808)
414
340
-
Gly
TCC
[SRA]
Identical group No.672343 (1 seq.)
>SRA1029610
SRR035087.150897
454 Sequencing (SRP001808)
275
201
-
Gly
TCC
[SRA]
Identical group No.672349 (1 seq.)
>SRA1029646
SRR035087.156060
454 Sequencing (SRP001808)
120
191
+
Gly
TCC
[SRA]
Identical group No.672410 (1 seq.)
>SRA1030152
SRR035087.234590
454 Sequencing (SRP001808)
36
110
+
Gly
TCC
[SRA]
Identical group No.672430 (1 seq.)
>SRA1030291
SRR035087.256924
454 Sequencing (SRP001808)
462
388
-
Gly
TCC
[SRA]
Identical group No.672433 (1 seq.)
>SRA1030315
SRR035087.261793
454 Sequencing (SRP001808)
368
294
-
Gly
TCC
[SRA]
Identical group No.672457 (1 seq.)
>SRA1030508
SRR035087.289129
454 Sequencing (SRP001808)
322
250
-
Gly
TCC
[SRA]
Identical group No.672503 (1 seq.)
>SRA1030987
SRR035087.357453
454 Sequencing (SRP001808)
192
119
-
Gly
TCC
[SRA]
Identical group No.672531 (1 seq.)
>SRA1031177
SRR035087.385667
454 Sequencing (SRP001808)
171
100
-
Gly
TCC
[SRA]
Identical group No.672539 (1 seq.)
>SRA1031214
SRR035087.392898
454 Sequencing (SRP001808)
360
288
-
Gly
TCC
[SRA]
Identical group No.672542 (1 seq.)
>SRA1031227
SRR035087.395801
454 Sequencing (SRP001808)
101
175
+
Gly
TCC
[SRA]
Identical group No.672554 (1 seq.)
>SRA1031378
SRR035087.421251
454 Sequencing (SRP001808)
268
340
+
Gly
TCC
[SRA]
Identical group No.672580 (1 seq.)
>SRA1031583
SRR035087.454098
454 Sequencing (SRP001808)
111
39
-
Gly
TCC
[SRA]
Identical group No.672602 (1 seq.)
>SRA1031817
SRR035087.494511
454 Sequencing (SRP001808)
268
194
-
Gly
TCC
[SRA]
Identical group No.672637 (1 seq.)
>SRA1032171
SRR035087.567949
454 Sequencing (SRP001808)
270
199
-
Gly
TCC
[SRA]
Identical group No.788002 (1 seq.)
>SRA1028919
SRR035087.37052
454 Sequencing (SRP001808)
127
56
-
Gly
TCC
[SRA]
Identical group No.788006 (1 seq.)
>SRA1028967
SRR035087.48493
454 Sequencing (SRP001808)
306
376
+
Gly
TCC
[SRA]
Identical group No.788008 (2 seq.)
>SRA1028970
SRR035087.48886
454 Sequencing (SRP001808)
111
182
+
Gly
TCC
[SRA]
>SRA1030783
SRR035087.331569
454 Sequencing (SRP001808)
111
182
+
Gly
TCC
[SRA]
Identical group No.788016 (1 seq.)
>SRA1029036
SRR035087.63412
454 Sequencing (SRP001808)
407
477
+
Gly
TCC
[SRA]
Identical group No.788037 (1 seq.)
>SRA1029309
SRR035087.107047
454 Sequencing (SRP001808)
234
307
+
Gly
TCC
[SRA]
Identical group No.788052 (1 seq.)
>SRA1029511
SRR035087.139591
454 Sequencing (SRP001808)
427
353
-
Gly
TCC
[SRA]
Identical group No.788055 (1 seq.)
>SRA1029558
SRR035087.145582
454 Sequencing (SRP001808)
180
253
+
Gly
TCC
[SRA]
Identical group No.788064 (1 seq.)
>SRA1029676
SRR035087.162238
454 Sequencing (SRP001808)
95
24
-
Gly
TCC
[SRA]
Identical group No.788083 (1 seq.)
>SRA1029956
SRR035087.208468
454 Sequencing (SRP001808)
103
31
-
Gly
TCC
[SRA]
Identical group No.788093 (1 seq.)
>SRA1030150
SRR035087.234509
454 Sequencing (SRP001808)
151
224
+
Gly
TCC
[SRA]
Identical group No.788111 (1 seq.)
>SRA1030334
SRR035087.264782
454 Sequencing (SRP001808)
91
161
+
Gly
TCC
[SRA]
Identical group No.788122 (1 seq.)
>SRA1030629
SRR035087.306990
454 Sequencing (SRP001808)
243
171
-
Gly
TCC
[SRA]
Identical group No.788124 (1 seq.)
>SRA1030641
SRR035087.308441
454 Sequencing (SRP001808)
117
187
+
Gly
TCC
[SRA]
Identical group No.788147 (1 seq.)
>SRA1031038
SRR035087.363343
454 Sequencing (SRP001808)
262
189
-
Gly
TCC
[SRA]
Identical group No.788169 (1 seq.)
>SRA1031361
SRR035087.419765
454 Sequencing (SRP001808)
304
231
-
Gly
TCC
[SRA]
Identical group No.788198 (1 seq.)
>SRA1031846
SRR035087.498499
454 Sequencing (SRP001808)
258
185
-
Gly
TCC
[SRA]
Identical group No.788226 (1 seq.)
>SRA1032205
SRR035087.575377
454 Sequencing (SRP001808)
256
326
+
Gly
TCC
[SRA]
Identical group No.788228 (1 seq.)
>SRA1032226
SRR035087.581096
454 Sequencing (SRP001808)
160
234
+
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK