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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TCG
HIT:
37 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235653 (1 seq.)
>SRA1030474
SRR035087.283954
454 Sequencing (SRP001808)
216
140
-
Arg
TCG
[SRA]
Identical group No.300315 (1 seq.)
>SRA1029126
SRR035087.78609
454 Sequencing (SRP001808)
87
162
+
Arg
TCG
[SRA]
Identical group No.300360 (1 seq.)
>SRA1029541
SRR035087.143538
454 Sequencing (SRP001808)
278
202
-
Arg
TCG
[SRA]
Identical group No.300373 (1 seq.)
>SRA1029612
SRR035087.151220
454 Sequencing (SRP001808)
179
103
-
Arg
TCG
[SRA]
Identical group No.300405 (1 seq.)
>SRA1029785
SRR035087.180725
454 Sequencing (SRP001808)
225
298
+
Arg
TCG
[SRA]
Identical group No.300406 (1 seq.)
>SRA1029792
SRR035087.181987
454 Sequencing (SRP001808)
316
392
+
Arg
TCG
[SRA]
Identical group No.300436 (1 seq.)
>SRA1029981
SRR035087.211371
454 Sequencing (SRP001808)
172
248
+
Arg
TCG
[SRA]
Identical group No.300446 (1 seq.)
>SRA1030044
SRR035087.220648
454 Sequencing (SRP001808)
294
370
+
Arg
TCG
[SRA]
Identical group No.300500 (1 seq.)
>SRA1030357
SRR035087.267063
454 Sequencing (SRP001808)
147
223
+
Arg
TCG
[SRA]
Identical group No.300503 (1 seq.)
>SRA1030376
SRR035087.270846
454 Sequencing (SRP001808)
137
213
+
Arg
TCG
[SRA]
Identical group No.300524 (1 seq.)
>SRA1030467
SRR035087.282988
454 Sequencing (SRP001808)
315
391
+
Arg
TCG
[SRA]
Identical group No.300575 (1 seq.)
>SRA1030806
SRR035087.333331
454 Sequencing (SRP001808)
294
370
+
Arg
TCG
[SRA]
Identical group No.300591 (1 seq.)
>SRA1030931
SRR035087.350620
454 Sequencing (SRP001808)
3
78
+
Arg
TCG
[SRA]
Identical group No.300601 (1 seq.)
>SRA1030972
SRR035087.356572
454 Sequencing (SRP001808)
229
305
+
Arg
TCG
[SRA]
Identical group No.300639 (1 seq.)
>SRA1031212
SRR035087.392392
454 Sequencing (SRP001808)
398
473
+
Arg
TCG
[SRA]
Identical group No.300641 (1 seq.)
>SRA1031218
SRR035087.393320
454 Sequencing (SRP001808)
75
1
-
Arg
TCG
[SRA]
Identical group No.300659 (1 seq.)
>SRA1031326
SRR035087.413218
454 Sequencing (SRP001808)
474
398
-
Arg
TCG
[SRA]
Identical group No.300661 (1 seq.)
>SRA1031331
SRR035087.413666
454 Sequencing (SRP001808)
143
68
-
Arg
TCG
[SRA]
Identical group No.300675 (1 seq.)
>SRA1031394
SRR035087.423268
454 Sequencing (SRP001808)
213
289
+
Arg
TCG
[SRA]
Identical group No.300679 (1 seq.)
>SRA1031424
SRR035087.427643
454 Sequencing (SRP001808)
373
297
-
Arg
TCG
[SRA]
Identical group No.300719 (1 seq.)
>SRA1031678
SRR035087.469841
454 Sequencing (SRP001808)
322
246
-
Arg
TCG
[SRA]
Identical group No.300724 (1 seq.)
>SRA1031709
SRR035087.475319
454 Sequencing (SRP001808)
216
142
-
Arg
TCG
[SRA]
Identical group No.300764 (1 seq.)
>SRA1032046
SRR035087.540438
454 Sequencing (SRP001808)
190
266
+
Arg
TCG
[SRA]
Identical group No.300796 (1 seq.)
>SRA1032231
SRR035087.583248
454 Sequencing (SRP001808)
96
172
+
Arg
TCG
[SRA]
Identical group No.484157 (1 seq.)
>SRA1029486
SRR035087.135115
454 Sequencing (SRP001808)
12
87
+
Arg
TCG
[SRA]
Identical group No.484452 (1 seq.)
>SRA1031528
SRR035087.444327
454 Sequencing (SRP001808)
263
336
+
Arg
TCG
[SRA]
Identical group No.484469 (1 seq.)
>SRA1031630
SRR035087.462484
454 Sequencing (SRP001808)
470
397
-
Arg
TCG
[SRA]
Identical group No.672262 (1 seq.)
>SRA1028962
SRR035087.47884
454 Sequencing (SRP001808)
334
262
-
Arg
TCG
[SRA]
Identical group No.672305 (1 seq.)
>SRA1029277
SRR035087.101750
454 Sequencing (SRP001808)
101
27
-
Arg
TCG
[SRA]
Identical group No.672313 (1 seq.)
>SRA1029349
SRR035087.113746
454 Sequencing (SRP001808)
364
437
+
Arg
TCG
[SRA]
Identical group No.672325 (1 seq.)
>SRA1029474
SRR035087.132875
454 Sequencing (SRP001808)
343
269
-
Arg
TCG
[SRA]
Identical group No.672332 (1 seq.)
>SRA1029533
SRR035087.142935
454 Sequencing (SRP001808)
191
117
-
Arg
TCG
[SRA]
Identical group No.672496 (1 seq.)
>SRA1030922
SRR035087.349377
454 Sequencing (SRP001808)
77
150
+
Arg
TCG
[SRA]
Identical group No.672582 (1 seq.)
>SRA1031590
SRR035087.456026
454 Sequencing (SRP001808)
110
182
+
Arg
TCG
[SRA]
Identical group No.672797 (1 seq.)
>SRA1031039
SRR035087.363541
454 Sequencing (SRP001808)
75
2
-
Arg
TCG
[SRA]
Identical group No.788101 (1 seq.)
>SRA1030237
SRR035087.247363
454 Sequencing (SRP001808)
33
106
+
Arg
TCG
[SRA]
Identical group No.788155 (1 seq.)
>SRA1031143
SRR035087.379882
454 Sequencing (SRP001808)
239
169
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK