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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TCT
HIT:
47 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244426 (2 seq.)
>SRA1028896
SRR035087.33043
454 Sequencing (SRP001808)
171
248
+
Arg
TCT
[SRA]
>SRA1028906
SRR035087.34994
454 Sequencing (SRP001808)
171
248
+
Arg
TCT
[SRA]
Identical group No.244435 (1 seq.)
>SRA1029083
SRR035087.70181
454 Sequencing (SRP001808)
320
396
+
Arg
TCT
[SRA]
Identical group No.244490 (1 seq.)
>SRA1030439
SRR035087.279778
454 Sequencing (SRP001808)
169
244
+
Arg
TCT
[SRA]
Identical group No.244528 (1 seq.)
>SRA1031557
SRR035087.449596
454 Sequencing (SRP001808)
287
213
-
Arg
TCT
[SRA]
Identical group No.244549 (1 seq.)
>SRA1031912
SRR035087.510961
454 Sequencing (SRP001808)
425
499
+
Arg
TCT
[SRA]
Identical group No.300281 (1 seq.)
>SRA1028839
SRR035087.18723
454 Sequencing (SRP001808)
15
88
+
Arg
TCT
[SRA]
Identical group No.300289 (1 seq.)
>SRA1028902
SRR035087.34528
454 Sequencing (SRP001808)
156
232
+
Arg
TCT
[SRA]
Identical group No.300292 (1 seq.)
>SRA1028914
SRR035087.36749
454 Sequencing (SRP001808)
95
19
-
Arg
TCT
[SRA]
Identical group No.300296 (1 seq.)
>SRA1028933
SRR035087.39109
454 Sequencing (SRP001808)
200
124
-
Arg
TCT
[SRA]
Identical group No.300317 (1 seq.)
>SRA1029138
SRR035087.79882
454 Sequencing (SRP001808)
284
208
-
Arg
TCT
[SRA]
Identical group No.300334 (1 seq.)
>SRA1029304
SRR035087.105835
454 Sequencing (SRP001808)
350
274
-
Arg
TCT
[SRA]
Identical group No.300341 (1 seq.)
>SRA1029374
SRR035087.118493
454 Sequencing (SRP001808)
324
399
+
Arg
TCT
[SRA]
Identical group No.300346 (1 seq.)
>SRA1029404
SRR035087.122282
454 Sequencing (SRP001808)
358
282
-
Arg
TCT
[SRA]
Identical group No.300357 (1 seq.)
>SRA1029526
SRR035087.141805
454 Sequencing (SRP001808)
169
93
-
Arg
TCT
[SRA]
Identical group No.300359 (1 seq.)
>SRA1029540
SRR035087.143446
454 Sequencing (SRP001808)
441
514
+
Arg
TCT
[SRA]
Identical group No.300395 (1 seq.)
>SRA1029746
SRR035087.174168
454 Sequencing (SRP001808)
288
212
-
Arg
TCT
[SRA]
Identical group No.300472 (1 seq.)
>SRA1030216
SRR035087.243883
454 Sequencing (SRP001808)
112
36
-
Arg
TCT
[SRA]
Identical group No.300480 (1 seq.)
>SRA1030268
SRR035087.252813
454 Sequencing (SRP001808)
506
428
-
Arg
TCT
[SRA]
Identical group No.300518 (1 seq.)
>SRA1030437
SRR035087.279654
454 Sequencing (SRP001808)
211
137
-
Arg
TCT
[SRA]
Identical group No.300535 (1 seq.)
>SRA1030546
SRR035087.294083
454 Sequencing (SRP001808)
237
313
+
Arg
TCT
[SRA]
Identical group No.300550 (1 seq.)
>SRA1030632
SRR035087.307262
454 Sequencing (SRP001808)
363
287
-
Arg
TCT
[SRA]
Identical group No.300597 (1 seq.)
>SRA1030965
SRR035087.355936
454 Sequencing (SRP001808)
90
166
+
Arg
TCT
[SRA]
Identical group No.300599 (1 seq.)
>SRA1030969
SRR035087.356541
454 Sequencing (SRP001808)
113
189
+
Arg
TCT
[SRA]
Identical group No.300653 (1 seq.)
>SRA1031281
SRR035087.406235
454 Sequencing (SRP001808)
238
161
-
Arg
TCT
[SRA]
Identical group No.300656 (1 seq.)
>SRA1031318
SRR035087.410949
454 Sequencing (SRP001808)
312
235
-
Arg
TCT
[SRA]
Identical group No.300688 (1 seq.)
>SRA1031483
SRR035087.437350
454 Sequencing (SRP001808)
254
180
-
Arg
TCT
[SRA]
Identical group No.300703 (1 seq.)
>SRA1031570
SRR035087.451590
454 Sequencing (SRP001808)
429
354
-
Arg
TCT
[SRA]
Identical group No.300708 (1 seq.)
>SRA1031589
SRR035087.456026
454 Sequencing (SRP001808)
28
104
+
Arg
TCT
[SRA]
Identical group No.300713 (1 seq.)
>SRA1031631
SRR035087.462484
454 Sequencing (SRP001808)
363
288
-
Arg
TCT
[SRA]
Identical group No.300740 (1 seq.)
>SRA1031811
SRR035087.493408
454 Sequencing (SRP001808)
193
120
-
Arg
TCT
[SRA]
Identical group No.300747 (1 seq.)
>SRA1031908
SRR035087.510000
454 Sequencing (SRP001808)
427
354
-
Arg
TCT
[SRA]
Identical group No.300813 (1 seq.)
>SRA1032377
SRR035087.617693
454 Sequencing (SRP001808)
202
280
+
Arg
TCT
[SRA]
Identical group No.484093 (1 seq.)
>SRA1029120
SRR035087.77730
454 Sequencing (SRP001808)
94
21
-
Arg
TCT
[SRA]
Identical group No.484370 (1 seq.)
>SRA1030879
SRR035087.342377
454 Sequencing (SRP001808)
211
286
+
Arg
TCT
[SRA]
Identical group No.484435 (1 seq.)
>SRA1031436
SRR035087.428730
454 Sequencing (SRP001808)
339
413
+
Arg
TCT
[SRA]
Identical group No.484531 (1 seq.)
>SRA1032058
SRR035087.541477
454 Sequencing (SRP001808)
403
330
-
Arg
TCT
[SRA]
Identical group No.484535 (2 seq.)
>SRA1032090
SRR035087.550828
454 Sequencing (SRP001808)
199
124
-
Arg
TCT
[SRA]
>SRA1032159
SRR035087.565514
454 Sequencing (SRP001808)
199
124
-
Arg
TCT
[SRA]
Identical group No.484560 (1 seq.)
>SRA1032322
SRR035087.604867
454 Sequencing (SRP001808)
428
502
+
Arg
TCT
[SRA]
Identical group No.672283 (1 seq.)
>SRA1029094
SRR035087.71557
454 Sequencing (SRP001808)
84
10
-
Arg
TCT
[SRA]
Identical group No.672361 (1 seq.)
>SRA1029752
SRR035087.175827
454 Sequencing (SRP001808)
168
96
-
Arg
TCT
[SRA]
Identical group No.672449 (1 seq.)
>SRA1030458
SRR035087.281933
454 Sequencing (SRP001808)
75
148
+
Arg
TCT
[SRA]
Identical group No.672500 (1 seq.)
>SRA1030971
SRR035087.356572
454 Sequencing (SRP001808)
144
218
+
Arg
TCT
[SRA]
Identical group No.672524 (1 seq.)
>SRA1031110
SRR035087.375467
454 Sequencing (SRP001808)
140
212
+
Arg
TCT
[SRA]
Identical group No.672556 (1 seq.)
>SRA1031401
SRR035087.424281
454 Sequencing (SRP001808)
297
371
+
Arg
TCT
[SRA]
Identical group No.672569 (1 seq.)
>SRA1031498
SRR035087.439080
454 Sequencing (SRP001808)
169
95
-
Arg
TCT
[SRA]
Identical group No.672613 (1 seq.)
>SRA1031924
SRR035087.514094
454 Sequencing (SRP001808)
275
204
-
Arg
TCT
[SRA]
Identical group No.672656 (1 seq.)
>SRA1032325
SRR035087.606134
454 Sequencing (SRP001808)
16
88
+
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK