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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TTC
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74743 (1 seq.)
>SRA1031042
SRR035087.364015
454 Sequencing (SRP001808)
432
346
-
Glu
TTC
[SRA]
Identical group No.235652 (1 seq.)
>SRA1030210
SRR035087.243587
454 Sequencing (SRP001808)
98
176
+
Glu
TTC
[SRA]
Identical group No.244436 (1 seq.)
>SRA1029085
SRR035087.70284
454 Sequencing (SRP001808)
282
208
-
Glu
TTC
[SRA]
Identical group No.244483 (1 seq.)
>SRA1030258
SRR035087.250919
454 Sequencing (SRP001808)
281
204
-
Glu
TTC
[SRA]
Identical group No.244537 (1 seq.)
>SRA1031745
SRR035087.480290
454 Sequencing (SRP001808)
332
255
-
Glu
TTC
[SRA]
Identical group No.300429 (1 seq.)
>SRA1029939
SRR035087.204932
454 Sequencing (SRP001808)
157
233
+
Glu
TTC
[SRA]
Identical group No.300496 (1 seq.)
>SRA1030330
SRR035087.264492
454 Sequencing (SRP001808)
235
311
+
Glu
TTC
[SRA]
Identical group No.300499 (1 seq.)
>SRA1030347
SRR035087.265837
454 Sequencing (SRP001808)
241
168
-
Glu
TTC
[SRA]
Identical group No.300533 (1 seq.)
>SRA1030520
SRR035087.290227
454 Sequencing (SRP001808)
329
405
+
Glu
TTC
[SRA]
Identical group No.300604 (1 seq.)
>SRA1031008
SRR035087.359997
454 Sequencing (SRP001808)
470
394
-
Glu
TTC
[SRA]
Identical group No.300631 (1 seq.)
>SRA1031155
SRR035087.381620
454 Sequencing (SRP001808)
305
229
-
Glu
TTC
[SRA]
Identical group No.300654 (1 seq.)
>SRA1031285
SRR035087.406612
454 Sequencing (SRP001808)
86
162
+
Glu
TTC
[SRA]
Identical group No.300718 (1 seq.)
>SRA1031663
SRR035087.467314
454 Sequencing (SRP001808)
123
47
-
Glu
TTC
[SRA]
Identical group No.484092 (1 seq.)
>SRA1029117
SRR035087.76509
454 Sequencing (SRP001808)
142
217
+
Glu
TTC
[SRA]
Identical group No.484136 (1 seq.)
>SRA1029395
SRR035087.121038
454 Sequencing (SRP001808)
341
415
+
Glu
TTC
[SRA]
Identical group No.484210 (1 seq.)
>SRA1029845
SRR035087.190912
454 Sequencing (SRP001808)
153
228
+
Glu
TTC
[SRA]
Identical group No.484219 (1 seq.)
>SRA1029894
SRR035087.197737
454 Sequencing (SRP001808)
367
442
+
Glu
TTC
[SRA]
Identical group No.484286 (1 seq.)
>SRA1030343
SRR035087.265599
454 Sequencing (SRP001808)
112
187
+
Glu
TTC
[SRA]
Identical group No.484318 (1 seq.)
>SRA1030585
SRR035087.300676
454 Sequencing (SRP001808)
286
212
-
Glu
TTC
[SRA]
Identical group No.484373 (1 seq.)
>SRA1030889
SRR035087.343536
454 Sequencing (SRP001808)
59
134
+
Glu
TTC
[SRA]
Identical group No.484380 (1 seq.)
>SRA1030940
SRR035087.352622
454 Sequencing (SRP001808)
155
230
+
Glu
TTC
[SRA]
Identical group No.484393 (1 seq.)
>SRA1031046
SRR035087.364391
454 Sequencing (SRP001808)
338
262
-
Glu
TTC
[SRA]
Identical group No.484449 (1 seq.)
>SRA1031507
SRR035087.440659
454 Sequencing (SRP001808)
293
217
-
Glu
TTC
[SRA]
Identical group No.484464 (1 seq.)
>SRA1031605
SRR035087.458990
454 Sequencing (SRP001808)
395
321
-
Glu
TTC
[SRA]
Identical group No.484479 (1 seq.)
>SRA1031715
SRR035087.476153
454 Sequencing (SRP001808)
154
79
-
Glu
TTC
[SRA]
Identical group No.484484 (1 seq.)
>SRA1031752
SRR035087.482122
454 Sequencing (SRP001808)
51
124
+
Glu
TTC
[SRA]
Identical group No.484522 (1 seq.)
>SRA1032006
SRR035087.529966
454 Sequencing (SRP001808)
268
193
-
Glu
TTC
[SRA]
Identical group No.484543 (1 seq.)
>SRA1032144
SRR035087.562604
454 Sequencing (SRP001808)
178
253
+
Glu
TTC
[SRA]
Identical group No.484784 (1 seq.)
>SRA1029603
SRR035087.150441
454 Sequencing (SRP001808)
11
86
+
Glu
TTC
[SRA]
Identical group No.672253 (1 seq.)
>SRA1028899
SRR035087.34202
454 Sequencing (SRP001808)
369
295
-
Glu
TTC
[SRA]
Identical group No.672364 (1 seq.)
>SRA1029763
SRR035087.177743
454 Sequencing (SRP001808)
331
404
+
Glu
TTC
[SRA]
Identical group No.672386 (1 seq.)
>SRA1029982
SRR035087.211414
454 Sequencing (SRP001808)
91
18
-
Glu
TTC
[SRA]
Identical group No.672390 (1 seq.)
>SRA1030006
SRR035087.215253
454 Sequencing (SRP001808)
17
91
+
Glu
TTC
[SRA]
Identical group No.672420 (1 seq.)
>SRA1030212
SRR035087.243663
454 Sequencing (SRP001808)
120
46
-
Glu
TTC
[SRA]
Identical group No.672493 (1 seq.)
>SRA1030896
SRR035087.343895
454 Sequencing (SRP001808)
322
394
+
Glu
TTC
[SRA]
Identical group No.672583 (1 seq.)
>SRA1031612
SRR035087.459971
454 Sequencing (SRP001808)
393
467
+
Glu
TTC
[SRA]
Identical group No.672595 (1 seq.)
>SRA1031727
SRR035087.477756
454 Sequencing (SRP001808)
203
131
-
Glu
TTC
[SRA]
Identical group No.672599 (1 seq.)
>SRA1031751
SRR035087.481691
454 Sequencing (SRP001808)
241
168
-
Glu
TTC
[SRA]
Identical group No.672617 (1 seq.)
>SRA1031945
SRR035087.517064
454 Sequencing (SRP001808)
33
106
+
Glu
TTC
[SRA]
Identical group No.672639 (1 seq.)
>SRA1032183
SRR035087.571013
454 Sequencing (SRP001808)
375
446
+
Glu
TTC
[SRA]
Identical group No.672658 (1 seq.)
>SRA1032346
SRR035087.609770
454 Sequencing (SRP001808)
116
44
-
Glu
TTC
[SRA]
Identical group No.672668 (1 seq.)
>SRA1032410
SRR035087.624453
454 Sequencing (SRP001808)
192
266
+
Glu
TTC
[SRA]
Identical group No.672790 (1 seq.)
>SRA1030096
SRR035087.227181
454 Sequencing (SRP001808)
394
466
+
Glu
TTC
[SRA]
Identical group No.788088 (1 seq.)
>SRA1030057
SRR035087.222043
454 Sequencing (SRP001808)
363
436
+
Glu
TTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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