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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TTT
HIT:
53 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74735 (1 seq.)
>SRA1030270
SRR035087.253573
454 Sequencing (SRP001808)
261
173
-
Lys
TTT
[SRA]
Identical group No.90581 (1 seq.)
>SRA1031113
SRR035087.375951
454 Sequencing (SRP001808)
65
149
+
Lys
TTT
[SRA]
Identical group No.118361 (1 seq.)
>SRA1031465
SRR035087.433770
454 Sequencing (SRP001808)
125
42
-
Lys
TTT
[SRA]
Identical group No.157532 (1 seq.)
>SRA1031832
SRR035087.496229
454 Sequencing (SRP001808)
295
379
+
Lys
TTT
[SRA]
Identical group No.235666 (1 seq.)
>SRA1032184
SRR035087.571175
454 Sequencing (SRP001808)
187
263
+
Lys
TTT
[SRA]
Identical group No.244492 (1 seq.)
>SRA1030485
SRR035087.285773
454 Sequencing (SRP001808)
449
525
+
Lys
TTT
[SRA]
Identical group No.244536 (1 seq.)
>SRA1031739
SRR035087.479184
454 Sequencing (SRP001808)
390
313
-
Lys
TTT
[SRA]
Identical group No.300305 (1 seq.)
>SRA1029026
SRR035087.60500
454 Sequencing (SRP001808)
395
320
-
Lys
TTT
[SRA]
Identical group No.300354 (1 seq.)
>SRA1029492
SRR035087.136356
454 Sequencing (SRP001808)
6
84
+
Lys
TTT
[SRA]
Identical group No.300453 (2 seq.)
>SRA1030099
SRR035087.227610
454 Sequencing (SRP001808)
14
90
+
Lys
TTT
[SRA]
>SRA1030203
SRR035087.242078
454 Sequencing (SRP001808)
14
90
+
Lys
TTT
[SRA]
Identical group No.300467 (1 seq.)
>SRA1030192
SRR035087.240160
454 Sequencing (SRP001808)
350
275
-
Lys
TTT
[SRA]
Identical group No.300522 (1 seq.)
>SRA1030455
SRR035087.281341
454 Sequencing (SRP001808)
247
171
-
Lys
TTT
[SRA]
Identical group No.300568 (2 seq.)
>SRA1030774
SRR035087.329975
454 Sequencing (SRP001808)
172
98
-
Lys
TTT
[SRA]
>SRA1031112
SRR035087.375779
454 Sequencing (SRP001808)
172
98
-
Lys
TTT
[SRA]
Identical group No.300611 (1 seq.)
>SRA1031065
SRR035087.367011
454 Sequencing (SRP001808)
420
344
-
Lys
TTT
[SRA]
Identical group No.300663 (1 seq.)
>SRA1031343
SRR035087.415023
454 Sequencing (SRP001808)
143
218
+
Lys
TTT
[SRA]
Identical group No.300717 (1 seq.)
>SRA1031662
SRR035087.467314
454 Sequencing (SRP001808)
243
170
-
Lys
TTT
[SRA]
Identical group No.300749 (1 seq.)
>SRA1031925
SRR035087.514094
454 Sequencing (SRP001808)
193
118
-
Lys
TTT
[SRA]
Identical group No.484053 (1 seq.)
>SRA1028881
SRR035087.29559
454 Sequencing (SRP001808)
99
174
+
Lys
TTT
[SRA]
Identical group No.484083 (1 seq.)
>SRA1029064
SRR035087.68446
454 Sequencing (SRP001808)
79
155
+
Lys
TTT
[SRA]
Identical group No.484129 (1 seq.)
>SRA1029333
SRR035087.110425
454 Sequencing (SRP001808)
59
134
+
Lys
TTT
[SRA]
Identical group No.484132 (1 seq.)
>SRA1029345
SRR035087.112955
454 Sequencing (SRP001808)
262
335
+
Lys
TTT
[SRA]
Identical group No.484139 (1 seq.)
>SRA1029407
SRR035087.122347
454 Sequencing (SRP001808)
103
28
-
Lys
TTT
[SRA]
Identical group No.484143 (1 seq.)
>SRA1029426
SRR035087.125428
454 Sequencing (SRP001808)
136
61
-
Lys
TTT
[SRA]
Identical group No.484180 (1 seq.)
>SRA1029660
SRR035087.158977
454 Sequencing (SRP001808)
165
238
+
Lys
TTT
[SRA]
Identical group No.484188 (1 seq.)
>SRA1029709
SRR035087.168416
454 Sequencing (SRP001808)
111
35
-
Lys
TTT
[SRA]
Identical group No.484251 (2 seq.)
>SRA1030100
SRR035087.227610
454 Sequencing (SRP001808)
92
167
+
Lys
TTT
[SRA]
>SRA1030204
SRR035087.242078
454 Sequencing (SRP001808)
92
167
+
Lys
TTT
[SRA]
Identical group No.484264 (1 seq.)
>SRA1030171
SRR035087.237705
454 Sequencing (SRP001808)
47
120
+
Lys
TTT
[SRA]
Identical group No.484281 (1 seq.)
>SRA1030280
SRR035087.255085
454 Sequencing (SRP001808)
273
346
+
Lys
TTT
[SRA]
Identical group No.484288 (1 seq.)
>SRA1030360
SRR035087.267597
454 Sequencing (SRP001808)
147
73
-
Lys
TTT
[SRA]
Identical group No.484324 (1 seq.)
>SRA1030604
SRR035087.303541
454 Sequencing (SRP001808)
132
58
-
Lys
TTT
[SRA]
Identical group No.484325 (1 seq.)
>SRA1030609
SRR035087.304054
454 Sequencing (SRP001808)
221
147
-
Lys
TTT
[SRA]
Identical group No.484332 (1 seq.)
>SRA1030638
SRR035087.308191
454 Sequencing (SRP001808)
409
336
-
Lys
TTT
[SRA]
Identical group No.484372 (1 seq.)
>SRA1030883
SRR035087.342535
454 Sequencing (SRP001808)
75
147
+
Lys
TTT
[SRA]
Identical group No.484383 (1 seq.)
>SRA1030976
SRR035087.356904
454 Sequencing (SRP001808)
21
94
+
Lys
TTT
[SRA]
Identical group No.484392 (1 seq.)
>SRA1031043
SRR035087.364015
454 Sequencing (SRP001808)
291
216
-
Lys
TTT
[SRA]
Identical group No.484402 (1 seq.)
>SRA1031168
SRR035087.384208
454 Sequencing (SRP001808)
39
111
+
Lys
TTT
[SRA]
Identical group No.484434 (1 seq.)
>SRA1031430
SRR035087.428121
454 Sequencing (SRP001808)
320
395
+
Lys
TTT
[SRA]
Identical group No.484444 (1 seq.)
>SRA1031480
SRR035087.437114
454 Sequencing (SRP001808)
373
298
-
Lys
TTT
[SRA]
Identical group No.484458 (1 seq.)
>SRA1031562
SRR035087.450373
454 Sequencing (SRP001808)
117
42
-
Lys
TTT
[SRA]
Identical group No.484489 (1 seq.)
>SRA1031782
SRR035087.485643
454 Sequencing (SRP001808)
188
262
+
Lys
TTT
[SRA]
Identical group No.484517 (1 seq.)
>SRA1031986
SRR035087.525875
454 Sequencing (SRP001808)
249
177
-
Lys
TTT
[SRA]
Identical group No.484544 (1 seq.)
>SRA1032149
SRR035087.564239
454 Sequencing (SRP001808)
438
363
-
Lys
TTT
[SRA]
Identical group No.484559 (1 seq.)
>SRA1032310
SRR035087.600233
454 Sequencing (SRP001808)
446
521
+
Lys
TTT
[SRA]
Identical group No.484561 (1 seq.)
>SRA1032351
SRR035087.610594
454 Sequencing (SRP001808)
71
146
+
Lys
TTT
[SRA]
Identical group No.672242 (1 seq.)
>SRA1028841
SRR035087.19045
454 Sequencing (SRP001808)
370
296
-
Lys
TTT
[SRA]
Identical group No.672375 (1 seq.)
>SRA1029874
SRR035087.195432
454 Sequencing (SRP001808)
411
484
+
Lys
TTT
[SRA]
Identical group No.672413 (1 seq.)
>SRA1030165
SRR035087.236157
454 Sequencing (SRP001808)
170
96
-
Lys
TTT
[SRA]
Identical group No.672482 (1 seq.)
>SRA1030785
SRR035087.331689
454 Sequencing (SRP001808)
465
537
+
Lys
TTT
[SRA]
Identical group No.672488 (1 seq.)
>SRA1030858
SRR035087.340495
454 Sequencing (SRP001808)
349
275
-
Lys
TTT
[SRA]
Identical group No.672513 (1 seq.)
>SRA1031044
SRR035087.364015
454 Sequencing (SRP001808)
212
138
-
Lys
TTT
[SRA]
Identical group No.672549 (1 seq.)
>SRA1031317
SRR035087.410749
454 Sequencing (SRP001808)
273
349
+
Lys
TTT
[SRA]
Identical group No.672651 (1 seq.)
>SRA1032251
SRR035087.587747
454 Sequencing (SRP001808)
152
80
-
Lys
TTT
[SRA]
Identical group No.788040 (1 seq.)
>SRA1029330
SRR035087.110135
454 Sequencing (SRP001808)
268
197
-
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK