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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001809)
Anticodon = TAT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254074 (5 seq.)
>WENV170608131
FUWD010895685
[FUWD] metagenome; unknown
315
240
-
Ile
TAT
[ENA]
¢þ
>SRA1032755
SRR035088.95246
454 Sequencing (SRP001809)
207
282
+
Ile
TAT
[SRA]
>SRA1041655
SRR035091.275026
454 Sequencing (SRP001812)
152
77
-
Ile
TAT
[SRA]
>SRA1042850
SRR035091.455295
454 Sequencing (SRP001812)
153
78
-
Ile
TAT
[SRA]
>SRA1045008
SRR035092.390947
454 Sequencing (SRP001813)
175
250
+
Ile
TAT
[SRA]
Identical group No.300694 (7 seq.)
>WENV170621637
FUWD013066765
[FUWD] metagenome; unknown
1659
1735
+
Ile
TAT
[ENA]
¢þ
>WENV170629826
FUWD013282718
[FUWD] metagenome; unknown
1659
1735
+
Ile
TAT
[ENA]
¢þ
>SRA1019155
SRR035082.410558
454 Sequencing (SRP001803)
67
143
+
Ile
TAT
[SRA]
>SRA1031529
SRR035087.444937
454 Sequencing (SRP001808)
287
211
-
Ile
TAT
[SRA]
>SRA1032513
SRR035088.34449
454 Sequencing (SRP001809)
251
175
-
Ile
TAT
[SRA]
>SRA1041942
SRR035091.317149
454 Sequencing (SRP001812)
252
176
-
Ile
TAT
[SRA]
>SRA1050136
SRR035095.198102
454 Sequencing (SRP001816)
287
363
+
Ile
TAT
[SRA]
Identical group No.453529 (11 seq.)
>SRA1023658
SRR035084.144988
454 Sequencing (SRP001805)
388
460
+
Ile
TAT
[SRA]
>SRA1025330
SRR035084.554212
454 Sequencing (SRP001805)
184
112
-
Ile
TAT
[SRA]
>SRA1027147
SRR035086.71370
454 Sequencing (SRP001807)
74
146
+
Ile
TAT
[SRA]
>SRA1034147
SRR035088.509475
454 Sequencing (SRP001809)
143
71
-
Ile
TAT
[SRA]
>SRA1034504
SRR035089.110974
454 Sequencing (SRP001810)
186
258
+
Ile
TAT
[SRA]
>SRA1035215
SRR035089.261929
454 Sequencing (SRP001810)
242
314
+
Ile
TAT
[SRA]
>SRA1045291
SRR035093.58882
454 Sequencing (SRP001814)
189
261
+
Ile
TAT
[SRA]
>SRA1046099
SRR035093.236186
454 Sequencing (SRP001814)
98
26
-
Ile
TAT
[SRA]
>SRA1050831
SRR035096.28699
454 Sequencing (SRP001817)
58
130
+
Ile
TAT
[SRA]
>SRA1051076
SRR035096.80226
454 Sequencing (SRP001817)
181
253
+
Ile
TAT
[SRA]
>SRA1051864
SRR035098.90054
454 Sequencing (SRP001819)
222
294
+
Ile
TAT
[SRA]
Identical group No.547637 (3 seq.)
>WENV170602323
FUWD010226390
[FUWD] metagenome; unknown
790
717
-
Ile
TAT
[ENA]
¢þ
>SRA1033380
SRR035088.240575
454 Sequencing (SRP001809)
111
38
-
Ile
TAT
[SRA]
>SRA1049408
SRR035095.72601
454 Sequencing (SRP001816)
315
242
-
Ile
TAT
[SRA]
Identical group No.612333 (1 seq.)
>SRA1032637
SRR035088.68953
454 Sequencing (SRP001809)
167
242
+
Ile
TAT
[SRA]
Identical group No.654396 (7 seq.)
>WENV170627295
FUWD013232509
[FUWD] metagenome; unknown
11617
11543
-
Ile
TAT
[ENA]
¢þ
>SRA1026671
SRR035085.254813
454 Sequencing (SRP001806)
313
239
-
Ile
TAT
[SRA]
>SRA1032829
SRR035088.110724
454 Sequencing (SRP001809)
149
223
+
Ile
TAT
[SRA]
>SRA1034947
SRR035089.204904
454 Sequencing (SRP001810)
44
118
+
Ile
TAT
[SRA]
>SRA1040736
SRR035091.140683
454 Sequencing (SRP001812)
188
262
+
Ile
TAT
[SRA]
>SRA1041564
SRR035091.261630
454 Sequencing (SRP001812)
295
221
-
Ile
TAT
[SRA]
>SRA1042611
SRR035091.416248
454 Sequencing (SRP001812)
24
98
+
Ile
TAT
[SRA]
Identical group No.711063 (3 seq.)
>WENV170612175
FUWD012523503
[FUWD] metagenome; unknown
145
73
-
Ile
TAT
[ENA]
¢þ
>SRA1033034
SRR035088.156076
454 Sequencing (SRP001809)
145
73
-
Ile
TAT
[SRA]
>SRA1033040
SRR035088.157809
454 Sequencing (SRP001809)
145
217
+
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK