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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001814)
Anticodon = CCG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300817 (2 seq.)
>WENV170608025
FUWD010884188
[FUWD] metagenome; unknown
692
768
+
Arg
CCG
[ENA]
¢þ
>SRA1045144
SRR035093.5320
454 Sequencing (SRP001814)
173
97
-
Arg
CCG
[SRA]
Identical group No.300923 (6 seq.)
>WENV170626690
FUWD013228847
[FUWD] metagenome; unknown
393
469
+
Arg
CCG
[ENA]
¢þ
>WENV170626953
FUWD013230530
[FUWD] metagenome; unknown
1734
1658
-
Arg
CCG
[ENA]
¢þ
>WENV170633692
FUWD013400252
[FUWD] metagenome; unknown
6617
6541
-
Arg
CCG
[ENA]
¢þ
>SRA1046389
SRR035093.295705
454 Sequencing (SRP001814)
394
470
+
Arg
CCG
[SRA]
>SRA1047282
SRR035093.501193
454 Sequencing (SRP001814)
336
412
+
Arg
CCG
[SRA]
>SRA1050716
SRR035096.3640
454 Sequencing (SRP001817)
104
180
+
Arg
CCG
[SRA]
Identical group No.300971 (1 seq.)
>SRA1047220
SRR035093.485800
454 Sequencing (SRP001814)
504
430
-
Arg
CCG
[SRA]
Identical group No.453858 (51 seq.)
>WENV181325648
OFLJ01010809
[OFLJ] seawater metagenome; seawater
166
93
-
Arg
CCG
[ENA]
¢þ
>WENV182540425
OJAJ01000575
[OJAJ] seawater metagenome; Sea water
350
423
+
Arg
CCG
[ENA]
¢þ
>WENV182540838
OJAQ01000034
[OJAQ] seawater metagenome; Sea water
17200
17273
+
Arg
CCG
[ENA]
¢þ
>WENV182543022
OJAZ01016767
[OJAZ] seawater metagenome; Sea water
509
582
+
Arg
CCG
[ENA]
¢þ
>WENV182544279
OJBF01001526
[OJBF] seawater metagenome; Sea water
1105
1032
-
Arg
CCG
[ENA]
¢þ
>WENV182545020
OJBL01003284
[OJBL] seawater metagenome; Sea water
578
651
+
Arg
CCG
[ENA]
¢þ
>WENV182545609
OJBN01008954
[OJBN] seawater metagenome; Sea water
469
396
-
Arg
CCG
[ENA]
¢þ
>WENV182548554
OJBW01002269
[OJBW] seawater metagenome; Sea water
1043
970
-
Arg
CCG
[ENA]
¢þ
>WENV182550206
OJBZ01011303
[OJBZ] seawater metagenome; Sea water
520
447
-
Arg
CCG
[ENA]
¢þ
>WENV182552688
OJCN01007496
[OJCN] seawater metagenome; Sea water
249
176
-
Arg
CCG
[ENA]
¢þ
>WENV182553177
OJCR01000270
[OJCR] seawater metagenome; Sea water
23619
23546
-
Arg
CCG
[ENA]
¢þ
>WENV182554074
OJCT01000535
[OJCT] seawater metagenome; Sea water
1211
1284
+
Arg
CCG
[ENA]
¢þ
>WENV182557164
OJDI01001666
[OJDI] seawater metagenome; Sea water
2175
2248
+
Arg
CCG
[ENA]
¢þ
>WENV182558570
OJDM01019079
[OJDM] seawater metagenome; Sea water
166
239
+
Arg
CCG
[ENA]
¢þ
>WENV182561593
OJDX01000021
[OJDX] seawater metagenome; Sea water
7115
7188
+
Arg
CCG
[ENA]
¢þ
>WENV182561924
OJDY01000014
[OJDY] seawater metagenome; Sea water
29321
29248
-
Arg
CCG
[ENA]
¢þ
>WENV182562669
OJEA01000031
[OJEA] seawater metagenome; Sea water
30001
29928
-
Arg
CCG
[ENA]
¢þ
>WENV182563020
OJEB01000001
[OJEB] seawater metagenome; Sea water
29951
29878
-
Arg
CCG
[ENA]
¢þ
>WENV182564051
OJEE01000017
[OJEE] seawater metagenome; Sea water
26873
26800
-
Arg
CCG
[ENA]
¢þ
>WENV182568984
OJEY01000003
[OJEY] seawater metagenome; Sea water
34979
34906
-
Arg
CCG
[ENA]
¢þ
>WENV182569688
OJFB01000019
[OJFB] seawater metagenome; Sea water
21815
21742
-
Arg
CCG
[ENA]
¢þ
>WENV182573742
OJFP01021313
[OJFP] seawater metagenome; Sea water
684
757
+
Arg
CCG
[ENA]
¢þ
>WENV182574546
OJFS01000016
[OJFS] seawater metagenome; Sea water
86095
86168
+
Arg
CCG
[ENA]
¢þ
>WENV182575781
OJFW01001324
[OJFW] seawater metagenome; Sea water
653
726
+
Arg
CCG
[ENA]
¢þ
>WENV182576613
OJFY01000546
[OJFY] seawater metagenome; Sea water
777
850
+
Arg
CCG
[ENA]
¢þ
>WENV182577940
OJGM01000063
[OJGM] seawater metagenome; Sea water
701
774
+
Arg
CCG
[ENA]
¢þ
>WENV182582071
OJHA01000001
[OJHA] seawater metagenome; Sea water
116126
116199
+
Arg
CCG
[ENA]
¢þ
>WENV182582379
OJHB01000009
[OJHB] seawater metagenome; Sea water
38825
38898
+
Arg
CCG
[ENA]
¢þ
>WENV182583336
OJHD01004402
[OJHD] seawater metagenome; Sea water
977
1050
+
Arg
CCG
[ENA]
¢þ
>WENV182584824
OJHG01014361
[OJHG] seawater metagenome; Sea water
536
463
-
Arg
CCG
[ENA]
¢þ
>WENV182586821
OJHK01006240
[OJHK] seawater metagenome; Sea water
1254
1327
+
Arg
CCG
[ENA]
¢þ
>WENV182587539
OJHN01000012
[OJHN] seawater metagenome; Sea water
24841
24768
-
Arg
CCG
[ENA]
¢þ
>WENV182588414
OJHT01001061
[OJHT] seawater metagenome; Sea water
137
210
+
Arg
CCG
[ENA]
¢þ
>WENV182592343
OJIR01000050
[OJIR] seawater metagenome; Sea water
20821
20748
-
Arg
CCG
[ENA]
¢þ
>WENV183054493
OLGU01000002
[OLGU] seawater metagenome; Sea water
181781
181854
+
Arg
CCG
[ENA]
¢þ
>WENV183055056
OLGW01002560
[OLGW] seawater metagenome; Sea water
1084
1011
-
Arg
CCG
[ENA]
¢þ
>WENV183058992
OLHS01000662
[OLHS] seawater metagenome; Sea water
1197
1124
-
Arg
CCG
[ENA]
¢þ
>WENV183059205
OLHU01000006
[OLHU] seawater metagenome; Sea water
21252
21179
-
Arg
CCG
[ENA]
¢þ
>WENV183060164
OLHX01000005
[OLHX] seawater metagenome; Sea water
32502
32575
+
Arg
CCG
[ENA]
¢þ
>WENV183061107
OLHY01049510
[OLHY] seawater metagenome; Sea water
156
83
-
Arg
CCG
[ENA]
¢þ
>WENV183619505
OOFQ01010888
[OOFQ] marine metagenome; seawater
166
93
-
Arg
CCG
[ENA]
¢þ
>WENV170568223
FLMP01023028
[FLMP] seawater metagenome; seawater
1240
1313
+
Arg
CCG
[ENA]
¢þ
>WENV170572651
FLOH01001118
[FLOH] marine metagenome; water
22291
22218
-
Arg
CCG
[ENA]
¢þ
>WENV170598684
FUWD010044878
[FUWD] metagenome; unknown
244
169
-
Arg
CCG
[ENA]
¢þ
>WENV170626824
FUWD013229743
[FUWD] metagenome; unknown
25790
25717
-
Arg
CCG
[ENA]
¢þ
>WENV170951291
MEHZ011546141
[MEHZ] marine metagenome; marine surface water
22029
21956
-
Arg
CCG
[ENA]
¢þ
>SRA1036503
SRR035089.534706
454 Sequencing (SRP001810)
149
76
-
Arg
CCG
[SRA]
>SRA1046568
SRR035093.334951
454 Sequencing (SRP001814)
240
167
-
Arg
CCG
[SRA]
>SRA1052644
SRR035098.243820
454 Sequencing (SRP001819)
322
247
-
Arg
CCG
[SRA]
>SRA1053314
SRR035098.381075
454 Sequencing (SRP001819)
324
249
-
Arg
CCG
[SRA]
>SRA1054461
SRR035099.137270
454 Sequencing (SRP001820)
289
364
+
Arg
CCG
[SRA]
Identical group No.484605 (6 seq.)
>WENV170600692
FUWD010138729
[FUWD] metagenome; unknown
656
583
-
Arg
CCG
[ENA]
¢þ
>WENV170624264
FUWD013178700
[FUWD] metagenome; unknown
1086
1159
+
Arg
CCG
[ENA]
¢þ
>WENV170632541
FUWD013384196
[FUWD] metagenome; unknown
1086
1159
+
Arg
CCG
[ENA]
¢þ
>SRA1043921
SRR035092.194289
454 Sequencing (SRP001813)
217
144
-
Arg
CCG
[SRA]
>SRA1045484
SRR035093.104399
454 Sequencing (SRP001814)
4
77
+
Arg
CCG
[SRA]
>SRA1051775
SRR035098.74556
454 Sequencing (SRP001819)
187
114
-
Arg
CCG
[SRA]
Identical group No.484699 (1 seq.)
>SRA1046654
SRR035093.353333
454 Sequencing (SRP001814)
410
486
+
Arg
CCG
[SRA]
Identical group No.667386 (24 seq.)
>WENV181323542
OFKY01005212
[OFKY] marine metagenome; sea ice
783
711
-
Arg
CCG
[ENA]
¢þ
>WENV181324516
OFLF01000289
[OFLF] marine metagenome; melt pond
676
748
+
Arg
CCG
[ENA]
¢þ
>WENV181324891
OFLH01031680
[OFLH] marine metagenome; sea ice
279
351
+
Arg
CCG
[ENA]
¢þ
>WENV181325041
OFLI01002713
[OFLI] seawater metagenome; seawater
490
562
+
Arg
CCG
[ENA]
¢þ
>WENV181325634
OFLJ01010057
[OFLJ] seawater metagenome; seawater
267
339
+
Arg
CCG
[ENA]
¢þ
>WENV181392886
OFRX01013578
[OFRX] seawater metagenome; seawater
719
791
+
Arg
CCG
[ENA]
¢þ
>WENV183618483
OOFO01002730
[OOFO] marine metagenome; seawater
490
562
+
Arg
CCG
[ENA]
¢þ
>WENV183619493
OOFQ01010100
[OOFQ] marine metagenome; seawater
267
339
+
Arg
CCG
[ENA]
¢þ
>WENV183620385
OOFR01046541
[OOFR] marine metagenome; seawater
409
481
+
Arg
CCG
[ENA]
¢þ
>WENV183620878
OOFT01000002
[OOFT] marine metagenome; sea ice
86729
86801
+
Arg
CCG
[ENA]
¢þ
>WENV183629248
OOGP01013608
[OOGP] marine metagenome; seawater
303
231
-
Arg
CCG
[ENA]
¢þ
>WENV170568592
FLMP01053497
[FLMP] seawater metagenome; seawater
738
664
-
Arg
CCG
[ENA]
¢þ
>WENV170614942
FUWD012844853
[FUWD] metagenome; unknown
16885
16959
+
Arg
CCG
[ENA]
¢þ
>WENV170949446
MEHZ011419342
[MEHZ] marine metagenome; marine surface water
830
756
-
Arg
CCG
[ENA]
¢þ
>SRA1023163
SRR035084.24540
454 Sequencing (SRP001805)
242
168
-
Arg
CCG
[SRA]
>SRA1023387
SRR035084.84859
454 Sequencing (SRP001805)
240
166
-
Arg
CCG
[SRA]
>SRA1023814
SRR035084.182308
454 Sequencing (SRP001805)
42
116
+
Arg
CCG
[SRA]
>SRA1024200
SRR035084.271140
454 Sequencing (SRP001805)
236
310
+
Arg
CCG
[SRA]
>SRA1024975
SRR035084.451654
454 Sequencing (SRP001805)
127
201
+
Arg
CCG
[SRA]
>SRA1024984
SRR035084.453237
454 Sequencing (SRP001805)
316
242
-
Arg
CCG
[SRA]
>SRA1045682
SRR035093.148167
454 Sequencing (SRP001814)
499
425
-
Arg
CCG
[SRA]
>SRA1053564
SRR035098.438933
454 Sequencing (SRP001819)
172
98
-
Arg
CCG
[SRA]
>SRA1053613
SRR035098.452358
454 Sequencing (SRP001819)
173
99
-
Arg
CCG
[SRA]
>W121063465
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
469602
469528
-
Arg
CCG
[ENA]
¡û
Identical group No.672777 (1 seq.)
>SRA1047538
SRR035093.571164
454 Sequencing (SRP001814)
259
184
-
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK