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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001819)
Anticodon = ACC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.805353 (10 seq.)
>WENV170615898
FUWD012871386
[FUWD] metagenome; unknown
303
232
-
Gly
ACC
[ENA]
¢þ
>WENV170616879
FUWD012906608
[FUWD] metagenome; unknown
69
140
+
Gly
ACC
[ENA]
¢þ
>WENV170620295
FUWD013028989
[FUWD] metagenome; unknown
1000
1071
+
Gly
ACC
[ENA]
¢þ
>WENV170628426
FUWD013246656
[FUWD] metagenome; unknown
1000
1071
+
Gly
ACC
[ENA]
¢þ
>SRA1018965
SRR035082.378377
454 Sequencing (SRP001803)
270
341
+
Gly
ACC
[SRA]
>SRA1024166
SRR035084.264027
454 Sequencing (SRP001805)
303
232
-
Gly
ACC
[SRA]
>SRA1051066
SRR035096.78816
454 Sequencing (SRP001817)
79
150
+
Gly
ACC
[SRA]
>SRA1052296
SRR035098.176991
454 Sequencing (SRP001819)
261
190
-
Gly
ACC
[SRA]
>SRA1053060
SRR035098.327638
454 Sequencing (SRP001819)
262
191
-
Gly
ACC
[SRA]
>SRA1053833
SRR035098.507562
454 Sequencing (SRP001819)
288
217
-
Gly
ACC
[SRA]
Identical group No.826265 (1 seq.)
>SRA1053515
SRR035098.425117
454 Sequencing (SRP001819)
320
250
-
Gly
ACC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK