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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = AAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49367 (9 seq.)
>W1711190279
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6126
6038
-
Leu
AAG
[ENA]
¡û
>W1711190318
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20471
20559
+
Leu
AAG
[ENA]
¡û
>W1711190422
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7467
7379
-
Leu
AAG
[ENA]
¡û
>W1711190550
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7499
7411
-
Leu
AAG
[ENA]
¡û
>W1711190598
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13636
13548
-
Leu
AAG
[ENA]
¡û
>W1711190659
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16286
16374
+
Leu
AAG
[ENA]
¡û
>W1711293184
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7485
7397
-
Leu
AAG
[ENA]
¡û
>W141206807
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7396
7308
-
Leu
AAG
[ENA]
¡û
>W1710743660
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23010
23098
+
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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