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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = ACG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209779 (9 seq.)
>W1711190249
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14102
14026
-
Arg
ACG
[ENA]
¡û
>W1711190324
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21578
21654
+
Arg
ACG
[ENA]
¡û
>W1711190428
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6360
6284
-
Arg
ACG
[ENA]
¡û
>W1711190556
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6392
6316
-
Arg
ACG
[ENA]
¡û
>W1711190604
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12529
12453
-
Arg
ACG
[ENA]
¡û
>W1711190665
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17393
17469
+
Arg
ACG
[ENA]
¡û
>W1711293190
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6378
6302
-
Arg
ACG
[ENA]
¡û
>W141206813
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6289
6213
-
Arg
ACG
[ENA]
¡û
>W1710743666
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
24117
24193
+
Arg
ACG
[ENA]
¡û
Identical group No.289060 (1 seq.)
>C09100403
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028484
1028409
-
Arg
ACG
[Ensembl]
¡û
Identical group No.368437 (2 seq.)
>W10127948
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1400
1325
-
Arg
ACG
[ENA]
¡û
>W11135493
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1400
1325
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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