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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123816 (8 seq.)
>W1711190226
LWRY01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
21528
21614
+
Leu
CAA
[ENA]
¡û
>W1711190305
LWRZ01000013
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
1365
1451
+
Leu
CAA
[ENA]
¡û
>W1711190444
LWSA01000175
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
3208
3122
-
Leu
CAA
[ENA]
¡û
>W1711190534
LWSB01000125
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
298
384
+
Leu
CAA
[ENA]
¡û
>W1711190622
LWSC01000136
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
27542
27456
-
Leu
CAA
[ENA]
¡û
>W1711190723
LWSD01000258
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3288
3202
-
Leu
CAA
[ENA]
¡û
>W1711293159
LZYI01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
3649
3563
-
Leu
CAA
[ENA]
¡û
>W141206822
AZMO01000140
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
195
281
+
Leu
CAA
[ENA]
¡û
Identical group No.132295 (6 seq.)
>W1710799200
LJUK01000190
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1694
1608
-
Leu
CAA
[ENA]
¡û
>W1710799750
LJVB01000008
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
48015
48101
+
Leu
CAA
[ENA]
¡û
>W1710799757
LJVB01000060
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
8
94
+
Leu
CAA
[ENA]
¡û
>W1610663157
LJUK01000190
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1694
1608
-
Leu
CAA
[ENA]
¡û
>W1610663707
LJVB01000008
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
48015
48101
+
Leu
CAA
[ENA]
¡û
>W1610663714
LJVB01000060
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
8
94
+
Leu
CAA
[ENA]
¡û
Identical group No.148637 (1 seq.)
>W131231788
AUIS01000025
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
21109
21023
-
Leu
CAA
[ENA]
¡û
Identical group No.181987 (1 seq.)
>C09100408
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1027820
1027736
-
Leu
CAA
[Ensembl]
¡û
Identical group No.220880 (5 seq.)
>W1711190371
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9731
9814
+
Leu
CAA
[ENA]
¡û
>W1711190513
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
2411
2494
+
Leu
CAA
[ENA]
¡û
>W1711293132
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14254
14171
-
Leu
CAA
[ENA]
¡û
>W141206738
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131700
131783
+
Leu
CAA
[ENA]
¡û
>W141695567
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
21676
21593
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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