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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113407 (11 seq.)
>W1711220188
LXQG01000052
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
8313
8227
-
Leu
CAG
[ENA]
¡û
>W1711292951
LZYE01000007
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
5017
4931
-
Leu
CAG
[ENA]
¡û
>W1711293000
LZYF01000030
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
5012
4926
-
Leu
CAG
[ENA]
¡û
>W1711293072
LZYG01000358
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
7548
7634
+
Leu
CAG
[ENA]
¡û
>W1711293092
LZYH01000427
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
5701
5787
+
Leu
CAG
[ENA]
¡û
>WENV181406594
OGCG01000595
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2032
1946
-
Leu
CAG
[ENA]
¢þ
>C181130836
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
883352
883266
-
Leu
CAG
-
¡û
>W09134914
ACVD01000073
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
82639
82553
-
Leu
CAG
[ENA]
¡û
>C151007974
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
964183
964097
-
Leu
CAG
[Ensembl]
¡û
>C11100515
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
987644
987558
-
Leu
CAG
[Ensembl]
¡û
>W1611004660
LXQG01000052
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
8313
8227
-
Leu
CAG
[ENA]
¡û
Identical group No.114262 (38 seq.)
>W1710777634
LJBT01000008
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
50960
50874
-
Leu
CAG
[ENA]
¡û
>W1711010483
LQRJ01000061
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
37039
36953
-
Leu
CAG
[ENA]
¡û
>W1711168364
LVXZ01000181
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
9488
9574
+
Leu
CAG
[ENA]
¡û
>W1711169896
LVZL01000093
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
61725
61639
-
Leu
CAG
[ENA]
¡û
>W1711190287
LWRY01000280
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
33338
33252
-
Leu
CAG
[ENA]
¡û
>W1711190386
LWRZ01000322
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9162
9248
+
Leu
CAG
[ENA]
¡û
>W1711190391
LWSA01000001
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
41167
41081
-
Leu
CAG
[ENA]
¡û
>W1711190484
LWSB01000018
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
9208
9294
+
Leu
CAG
[ENA]
¡û
>W1711190641
LWSC01000298
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
44646
44560
-
Leu
CAG
[ENA]
¡û
>W1711190700
LWSD01000181
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
9160
9246
+
Leu
CAG
[ENA]
¡û
>W1711293199
LZYI01000136
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10460
10374
-
Leu
CAG
[ENA]
¡û
>W1711312184
MASQ01000140
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
11075
10989
-
Leu
CAG
[ENA]
¡û
>W1711585837
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
914425
914339
-
Leu
CAG
[ENA]
¡û
>WENV181296324
OFHJ01025476
[OFHJ] soil metagenome; Clay
614
528
-
Leu
CAG
[ENA]
¢þ
>W141206776
AZMO01000024
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
42046
41960
-
Leu
CAG
[ENA]
¡û
>W141262905
CCCS020000034
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
53749
53835
+
Leu
CAG
[ENA]
¡û
>C08000433
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1528154
1528071
-
Leu
CAG
[Ensembl]
¡û
>WENV170008366
AOMP01000528
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
2289
2375
+
Leu
CAG
[ENA]
¢þ
>WENV170008654
AOMQ01013973
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
207
292
+
Leu
CAG
[ENA]
¢þ
>C191005122
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2763874
2763788
-
Leu
CAG
-
¡û
>W141695591
JMEB01000189
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
71322
71408
+
Leu
CAG
[ENA]
¡û
>W141738840
JNNH01000728
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
461
547
+
Leu
CAG
[ENA]
¡û
>C09100386
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1649194
1649108
-
Leu
CAG
[Ensembl]
¡û
>W1910831859
MXAV01000044
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
48179
48093
-
Leu
CAG
[ENA]
¡û
>W1810257110
PQJK01000001
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
340097
340183
+
Leu
CAG
[ENA]
¡û
>W1810679264
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
5460
5546
+
Leu
CAG
[ENA]
¡û
>W10127972
AEFB01000286
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1976
2062
+
Leu
CAG
[ENA]
¡û
>C11100751
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1444323
1444237
-
Leu
CAG
[Ensembl]
¡û
>W11135517
AEFB01000286
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1976
2062
+
Leu
CAG
[ENA]
¡û
>W11164265
AFJD01000005
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
40679
40765
+
Leu
CAG
[ENA]
¡û
>W11168516
AFOH01000003
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
13210
13296
+
Leu
CAG
[ENA]
¡û
>W1610627886
LIEB01000008
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
50934
50848
-
Leu
CAG
[ENA]
¡û
>W1610641820
LJBT01000008
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
50960
50874
-
Leu
CAG
[ENA]
¡û
>W1610859003
LQRJ01000061
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
37039
36953
-
Leu
CAG
[ENA]
¡û
>W1610978279
LVXZ01000181
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
9488
9574
+
Leu
CAG
[ENA]
¡û
>W1611057385
MASQ01000140
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
11075
10989
-
Leu
CAG
[ENA]
¡û
>W1710743700
LGYM01000034
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
74452
74538
+
Leu
CAG
[ENA]
¡û
>W1710759013
LIEB01000008
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
50934
50848
-
Leu
CAG
[ENA]
¡û
Identical group No.198759 (5 seq.)
>W1710799205
LJUK01000230
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
5441
5525
+
Leu
CAG
[ENA]
¡û
>W1710799753
LJVB01000027
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
15615
15699
+
Leu
CAG
[ENA]
¡û
>WENV180350639
OBLQ010005127
[OBLQ] soil metagenome; soil
2472
2556
+
Leu
CAG
[ENA]
¢þ
>W1610663162
LJUK01000230
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
5441
5525
+
Leu
CAG
[ENA]
¡û
>W1610663710
LJVB01000027
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
15615
15699
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK