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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462544 (15 seq.)
>W1710777638
LJBT01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
183380
183455
+
Thr
CGT
[ENA]
¡û
>W1711010480
LQRJ01000055
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
61406
61331
-
Thr
CGT
[ENA]
¡û
>WENV181296379
OFHJ01030761
[OFHJ] soil metagenome; Clay
209
284
+
Thr
CGT
[ENA]
¢þ
>C08000434
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
980108
980036
-
Thr
CGT
[Ensembl]
¡û
>C191005123
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2040722
2040647
-
Thr
CGT
-
¡û
>W141738830
JNNH01000167
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
82
7
-
Thr
CGT
[ENA]
¡û
>C09100412
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
805918
805843
-
Thr
CGT
[Ensembl]
¡û
>W1810257131
PQJK01000004
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
144987
145062
+
Thr
CGT
[ENA]
¡û
>W1810679265
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
501598
501673
+
Thr
CGT
[ENA]
¡û
>W10127978
AEFB01000499
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2709
2634
-
Thr
CGT
[ENA]
¡û
>W11135523
AEFB01000499
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2709
2634
-
Thr
CGT
[ENA]
¡û
>W1610627892
LIEB01000017
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
183354
183429
+
Thr
CGT
[ENA]
¡û
>W1610641824
LJBT01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
183380
183455
+
Thr
CGT
[ENA]
¡û
>W1610859000
LQRJ01000055
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
61406
61331
-
Thr
CGT
[ENA]
¡û
>W1710759019
LIEB01000017
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
183354
183429
+
Thr
CGT
[ENA]
¡û
Identical group No.490915 (9 seq.)
>W1711169897
LVZL01000093
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
8020
7945
-
Thr
CGT
[ENA]
¡û
>W1711312176
MASQ01000094
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
42685
42760
+
Thr
CGT
[ENA]
¡û
>W141262906
CCCS020000034
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
107428
107503
+
Thr
CGT
[ENA]
¡û
>WENV170008436
AOMP01005632
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
76
1
-
Thr
CGT
[ENA]
¢þ
>WENV170008605
AOMQ01006165
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
303
378
+
Thr
CGT
[ENA]
¢þ
>WENV170008642
AOMQ01011219
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
303
378
+
Thr
CGT
[ENA]
¢þ
>C11100752
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1390618
1390543
-
Thr
CGT
[Ensembl]
¡û
>W11164266
AFJD01000005
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
94384
94459
+
Thr
CGT
[ENA]
¡û
>W1611057377
MASQ01000094
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
42685
42760
+
Thr
CGT
[ENA]
¡û
Identical group No.551279 (4 seq.)
>W1710798741
LJTW01000164
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
6669
6594
-
Thr
CGT
[ENA]
¡û
>W1710799767
LJVB01000070
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
85
10
-
Thr
CGT
[ENA]
¡û
>W1610662698
LJTW01000164
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
6669
6594
-
Thr
CGT
[ENA]
¡û
>W1610663724
LJVB01000070
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
85
10
-
Thr
CGT
[ENA]
¡û
Identical group No.556750 (8 seq.)
>W1711220222
LXQG01000199
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
340
415
+
Thr
CGT
[ENA]
¡û
>W1711293113
LZYH01001005
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
112
37
-
Thr
CGT
[ENA]
¡û
>WENV180591313
OCOV01010783
[OCOV] marine metagenome; ENVO:01000301
190
265
+
Thr
CGT
[ENA]
¢þ
>WENV181406942
OGCG01002936
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
6739
6814
+
Thr
CGT
[ENA]
¢þ
>C181130809
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
1558728
1558803
+
Thr
CGT
-
¡û
>W09134922
ACVD01000082
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
686
611
-
Thr
CGT
[ENA]
¡û
>C151007972
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
1402169
1402094
-
Thr
CGT
[Ensembl]
¡û
>W1611004694
LXQG01000199
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
340
415
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK