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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482458 (1 seq.)
>C09100406
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028132
1028059
-
Gln
CTG
[Ensembl]
¡û
Identical group No.487847 (1 seq.)
>W141262928
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
239674
239601
-
Gln
CTG
[ENA]
¡û
Identical group No.491382 (6 seq.)
>W1711190367
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9301
9374
+
Gln
CTG
[ENA]
¡û
>W1711190509
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
1981
2054
+
Gln
CTG
[ENA]
¡û
>W1711190719
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
440
367
-
Gln
CTG
[ENA]
¡û
>W1711293128
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14684
14611
-
Gln
CTG
[ENA]
¡û
>W141206734
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131270
131343
+
Gln
CTG
[ENA]
¡û
>W141695563
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
22106
22033
-
Gln
CTG
[ENA]
¡û
Identical group No.507223 (2 seq.)
>W10127951
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
694
621
-
Gln
CTG
[ENA]
¡û
>W11135496
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
694
621
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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