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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CTT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254251 (2 seq.)
>W10127955
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
114
38
-
Lys
CTT
[ENA]
¡û
>W11135500
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
114
38
-
Lys
CTT
[ENA]
¡û
Identical group No.288687 (1 seq.)
>C09300004
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033081
1033006
-
Lys
CTT
[Ensembl]
¡û
Identical group No.319213 (6 seq.)
>W1711190339
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
3001
3076
+
Lys
CTT
[ENA]
¡û
>W1711190459
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10173
10098
-
Lys
CTT
[ENA]
¡û
>W1711190522
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6474
6549
+
Lys
CTT
[ENA]
¡û
>W1711190732
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
4022
4097
+
Lys
CTT
[ENA]
¡û
>W1711293141
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10191
10116
-
Lys
CTT
[ENA]
¡û
>W141206747
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135763
135838
+
Lys
CTT
[ENA]
¡û
Identical group No.376906 (2 seq.)
>W1710798676
LJTU01000059
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
6495
6420
-
Lys
CTT
[ENA]
¡û
>W1610662633
LJTU01000059
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
6495
6420
-
Lys
CTT
[ENA]
¡û
Identical group No.377889 (1 seq.)
>W141695576
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
17282
17207
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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