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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190552 (13 seq.)
>W1711190237
LWRY01000028
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
23739
23655
-
Leu
GAG
[ENA]
¡û
>W1711190375
LWRZ01000225
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
23721
23637
-
Leu
GAG
[ENA]
¡û
>W1711190435
LWSA01000151
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
23735
23651
-
Leu
GAG
[ENA]
¡û
>W1711190482
LWSB01000013
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
59948
60032
+
Leu
GAG
[ENA]
¡û
>W1711190636
LWSC01000277
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
29743
29827
+
Leu
GAG
[ENA]
¡û
>W1711190701
LWSD01000189
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
23704
23620
-
Leu
GAG
[ENA]
¡û
>W1711293162
LZYI01000062
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
25903
25819
-
Leu
GAG
[ENA]
¡û
>W1711585803
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
510685
510769
+
Leu
GAG
[ENA]
¡û
>W141206774
AZMO01000019
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
59845
59929
+
Leu
GAG
[ENA]
¡û
>W141695597
JMEB01000210
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
32606
32522
-
Leu
GAG
[ENA]
¡û
>W1910831822
MXAV01000006
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
12421
12505
+
Leu
GAG
[ENA]
¡û
>W11168547
AFOH01000122
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
26878
26962
+
Leu
GAG
[ENA]
¡û
>W1710743676
LGYM01000013
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
91414
91498
+
Leu
GAG
[ENA]
¡û
Identical group No.207298 (1 seq.)
>W11300861
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
782
698
-
Leu
GAG
[ENA]
¡û
Identical group No.210185 (2 seq.)
>W1710798664
LJTU01000025
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
14892
14808
-
Leu
GAG
[ENA]
¡û
>W1610662621
LJTU01000025
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
14892
14808
-
Leu
GAG
[ENA]
¡û
Identical group No.213606 (1 seq.)
>W131231774
AUIS01000012
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
24003
23919
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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