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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GAT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269438 (2 seq.)
>W131231779
AUIS01000016
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
3425
3349
-
Ile
GAT
[ENA]
¡û
>W131231794
AUIS01000036
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
3425
3349
-
Ile
GAT
[ENA]
¡û
Identical group No.288679 (1 seq.)
>C09300008
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028952
1028877
-
Ile
GAT
[Ensembl]
¡û
Identical group No.319552 (7 seq.)
>W143004115
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135008
135083
+
Ile
GAT
[ENA]
¡û
>W143016598
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
18034
17959
-
Ile
GAT
[ENA]
¡û
>W1730023179
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2246
2321
+
Ile
GAT
[ENA]
¡û
>W1730023192
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10928
10853
-
Ile
GAT
[ENA]
¡û
>W1730023198
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
5719
5794
+
Ile
GAT
[ENA]
¡û
>W1730023221
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3267
3342
+
Ile
GAT
[ENA]
¡û
>W1730025104
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10946
10871
-
Ile
GAT
[ENA]
¡û
Identical group No.422347 (9 seq.)
>W143004122
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6596
6522
-
Ile
GAT
[ENA]
¡û
>W1730013215
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23810
23884
+
Ile
GAT
[ENA]
¡û
>W1730023172
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14409
14335
-
Ile
GAT
[ENA]
¡û
>W1730023177
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21271
21345
+
Ile
GAT
[ENA]
¡û
>W1730023191
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6667
6593
-
Ile
GAT
[ENA]
¡û
>W1730023205
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6699
6625
-
Ile
GAT
[ENA]
¡û
>W1730023211
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12836
12762
-
Ile
GAT
[ENA]
¡û
>W1730023215
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17086
17160
+
Ile
GAT
[ENA]
¡û
>W1730025111
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6685
6611
-
Ile
GAT
[ENA]
¡û
Identical group No.457039 (2 seq.)
>W10127945
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1727
1653
-
Ile
GAT
[ENA]
¡û
>W11135490
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1727
1653
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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