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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319206 (6 seq.)
>W1711190364
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
8943
9018
+
Cys
GCA
[ENA]
¡û
>W1711190506
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
1623
1698
+
Cys
GCA
[ENA]
¡û
>W1711190716
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
798
723
-
Cys
GCA
[ENA]
¡û
>W1711293125
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
15042
14967
-
Cys
GCA
[ENA]
¡û
>W141206731
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
130912
130987
+
Cys
GCA
[ENA]
¡û
>W141695560
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
22464
22389
-
Cys
GCA
[ENA]
¡û
Identical group No.401473 (13 seq.)
>W1711220217
LXQG01000173
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
2623
2549
-
Cys
GCA
[ENA]
¡û
>W1711292954
LZYE01000049
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
811
885
+
Cys
GCA
[ENA]
¡û
>W1711292961
LZYE01000145
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
504
430
-
Cys
GCA
[ENA]
¡û
>W1711293009
LZYF01000135
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
846
772
-
Cys
GCA
[ENA]
¡û
>W1711293010
LZYF01000136
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
1387
1313
-
Cys
GCA
[ENA]
¡û
>W1711293046
LZYG01000062
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
811
885
+
Cys
GCA
[ENA]
¡û
>W1711293070
LZYG01000289
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
891
817
-
Cys
GCA
[ENA]
¡û
>W1711293087
LZYH01000349
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
2531
2457
-
Cys
GCA
[ENA]
¡û
>C181130804
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
1076221
1076295
+
Cys
GCA
-
¡û
>W09134926
ACVD01000116
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
103813
103887
+
Cys
GCA
[ENA]
¡û
>C151007951
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
1804285
1804359
+
Cys
GCA
[Ensembl]
¡û
>C11100488
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
1159634
1159708
+
Cys
GCA
[Ensembl]
¡û
>W1611004689
LXQG01000173
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
2623
2549
-
Cys
GCA
[ENA]
¡û
Identical group No.476433 (1 seq.)
>W141738819
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
12379
12453
+
Cys
GCA
[ENA]
¡û
Identical group No.487846 (1 seq.)
>W141262923
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
242042
241969
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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