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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.688065 (6 seq.)
>W1711190336
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2409
2483
+
Gly
GCC
[ENA]
¡û
>W1711190456
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10765
10691
-
Gly
GCC
[ENA]
¡û
>W1711190519
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
5882
5956
+
Gly
GCC
[ENA]
¡û
>W1711190729
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3430
3504
+
Gly
GCC
[ENA]
¡û
>W1711293138
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10783
10709
-
Gly
GCC
[ENA]
¡û
>W141206744
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135171
135245
+
Gly
GCC
[ENA]
¡û
Identical group No.752890 (1 seq.)
>W141695573
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
17871
17797
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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