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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161581 (7 seq.)
>W1711190344
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
6296
6373
+
Pro
GGG
[ENA]
¡û
>W1711190464
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6878
6801
-
Pro
GGG
[ENA]
¡û
>W1711190527
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
9769
9846
+
Pro
GGG
[ENA]
¡û
>W1711190737
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
7317
7394
+
Pro
GGG
[ENA]
¡û
>W1711293146
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6896
6819
-
Pro
GGG
[ENA]
¡û
>W141206752
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
139058
139135
+
Pro
GGG
[ENA]
¡û
>W141695581
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
13986
13909
-
Pro
GGG
[ENA]
¡û
Identical group No.261483 (2 seq.)
>W1710799201
LJUK01000214
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1869
1945
+
Pro
GGG
[ENA]
¡û
>W1610663158
LJUK01000214
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1869
1945
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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