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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.508434 (7 seq.)
>W1711190284
LWRY01000237
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
22129
22204
+
Thr
GGT
[ENA]
¡û
>W1711190620
LWSC01000124
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
28225
28300
+
Thr
GGT
[ENA]
¡û
>W1711585798
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
354400
354475
+
Thr
GGT
[ENA]
¡û
>W141695603
JMEB01000250
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
10712
10787
+
Thr
GGT
[ENA]
¡û
>W1910831817
MXAV01000004
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
150125
150200
+
Thr
GGT
[ENA]
¡û
>W11168539
AFOH01000069
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
13900
13825
-
Thr
GGT
[ENA]
¡û
>W1710743695
LGYM01000030
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
57990
57915
-
Thr
GGT
[ENA]
¡û
Identical group No.510589 (7 seq.)
>W1711190347
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7990
8065
+
Thr
GGT
[ENA]
¡û
>W1711190467
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
5184
5109
-
Thr
GGT
[ENA]
¡û
>W1711190530
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
11463
11538
+
Thr
GGT
[ENA]
¡û
>W1711190678
LWSD01000073
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16892
16817
-
Thr
GGT
[ENA]
¡û
>W1711293149
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
5202
5127
-
Thr
GGT
[ENA]
¡û
>W141206755
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
140752
140827
+
Thr
GGT
[ENA]
¡û
>W141695584
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
12294
12219
-
Thr
GGT
[ENA]
¡û
Identical group No.510591 (6 seq.)
>W1711190303
LWRZ01000012
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
16214
16139
-
Thr
GGT
[ENA]
¡û
>W1711190440
LWSA01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
210
135
-
Thr
GGT
[ENA]
¡û
>W1711190573
LWSB01000260
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
22860
22935
+
Thr
GGT
[ENA]
¡û
>W1711190683
LWSD01000101
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
11125
11050
-
Thr
GGT
[ENA]
¡û
>W1711293171
LZYI01000079
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
22846
22921
+
Thr
GGT
[ENA]
¡û
>W141206796
AZMO01000067
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
22757
22832
+
Thr
GGT
[ENA]
¡û
Identical group No.551281 (4 seq.)
>W1710799182
LJUK01000073
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
14173
14248
+
Thr
GGT
[ENA]
¡û
>W1710799772
LJVB01000099
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
245
170
-
Thr
GGT
[ENA]
¡û
>W1610663139
LJUK01000073
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
14173
14248
+
Thr
GGT
[ENA]
¡û
>W1610663729
LJVB01000099
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
245
170
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK