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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319216 (7 seq.)
>W1711190347
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7990
8065
+
Thr
GGT
[ENA]
¡û
>W1711190467
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
5184
5109
-
Thr
GGT
[ENA]
¡û
>W1711190530
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
11463
11538
+
Thr
GGT
[ENA]
¡û
>W1711190678
LWSD01000073
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16892
16817
-
Thr
GGT
[ENA]
¡û
>W1711293149
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
5202
5127
-
Thr
GGT
[ENA]
¡û
>W141206755
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
140752
140827
+
Thr
GGT
[ENA]
¡û
>W141695584
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
12294
12219
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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