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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GTA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181024 (27 seq.)
>W1710777623
LJBT01000002
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
42275
42191
-
Tyr
GTA
[ENA]
¡û
>W1711010490
LQRJ01000069
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
48548
48464
-
Tyr
GTA
[ENA]
¡û
>W1711168333
LVXZ01000041
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5854
5938
+
Tyr
GTA
[ENA]
¡û
>W1711220218
LXQG01000189
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
25585
25669
+
Tyr
GTA
[ENA]
¡û
>W1711292978
LZYE01000255
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
14228
14312
+
Tyr
GTA
[ENA]
¡û
>W1711292996
LZYF01000026
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
18513
18429
-
Tyr
GTA
[ENA]
¡û
>W1711293038
LZYG01000022
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
46
130
+
Tyr
GTA
[ENA]
¡û
>W1711293100
LZYH01000631
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
1373
1457
+
Tyr
GTA
[ENA]
¡û
>W131231791
AUIS01000034
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
18514
18598
+
Tyr
GTA
[ENA]
¡û
>WENV181406422
OGCG01000244
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
391
307
-
Tyr
GTA
[ENA]
¢þ
>C08000393
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
453541
453625
+
Tyr
GTA
[Ensembl]
¡û
>W09134886
ACVD01000014
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
712
628
-
Tyr
GTA
[ENA]
¡û
>C181130795
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
517754
517838
+
Tyr
GTA
-
¡û
>C191005128
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1077744
1077660
-
Tyr
GTA
-
¡û
>C09100346
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
275027
275111
+
Tyr
GTA
[Ensembl]
¡û
>W1810257142
PQJK01000011
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
25254
25338
+
Tyr
GTA
[ENA]
¡û
>W1810679269
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
1293136
1293052
-
Tyr
GTA
[ENA]
¡û
>C151007936
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
605080
605164
+
Tyr
GTA
[Ensembl]
¡û
>W10127992
AEFB01001065
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2475
2559
+
Tyr
GTA
[ENA]
¡û
>C11100479
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
597295
597379
+
Tyr
GTA
[Ensembl]
¡û
>W11135537
AEFB01001065
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2475
2559
+
Tyr
GTA
[ENA]
¡û
>W1610627917
LIEB01000044
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
187725
187809
+
Tyr
GTA
[ENA]
¡û
>W1610641809
LJBT01000002
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
42275
42191
-
Tyr
GTA
[ENA]
¡û
>W1610859010
LQRJ01000069
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
48548
48464
-
Tyr
GTA
[ENA]
¡û
>W1610978248
LVXZ01000041
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5854
5938
+
Tyr
GTA
[ENA]
¡û
>W1611004690
LXQG01000189
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
25585
25669
+
Tyr
GTA
[ENA]
¡û
>W1710759044
LIEB01000044
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
187725
187809
+
Tyr
GTA
[ENA]
¡û
Identical group No.187517 (9 seq.)
>W1711169854
LVZL01000001
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
58183
58099
-
Tyr
GTA
[ENA]
¡û
>W1711312144
MASQ01000020
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4115
4199
+
Tyr
GTA
[ENA]
¡û
>W141262934
CCCS020000037
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
39758
39674
-
Tyr
GTA
[ENA]
¡û
>WENV170008370
AOMP01000795
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
1570
1654
+
Tyr
GTA
[ENA]
¢þ
>WENV170008537
AOMQ01002396
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
1153
1237
+
Tyr
GTA
[ENA]
¢þ
>WENV170008539
AOMQ01002414
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
129
45
-
Tyr
GTA
[ENA]
¢þ
>C11100733
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
2702805
2702721
-
Tyr
GTA
[Ensembl]
¡û
>W11164260
AFJD01000003
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
224066
224150
+
Tyr
GTA
[ENA]
¡û
>W1611057345
MASQ01000020
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4115
4199
+
Tyr
GTA
[ENA]
¡û
Identical group No.197394 (8 seq.)
>W1710799180
LJUK01000073
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
13907
13991
+
Tyr
GTA
[ENA]
¡û
>W1710799770
LJVB01000099
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
511
427
-
Tyr
GTA
[ENA]
¡û
>WENV180254441
OBEQ010630353
[OBEQ] groundwater metagenome; groundwater
372
288
-
Tyr
GTA
[ENA]
¢þ
>WENV180350782
OBLQ010010801
[OBLQ] soil metagenome; soil
3021
3105
+
Tyr
GTA
[ENA]
¢þ
>WENV181288191
OFGY01023659
[OFGY] soil metagenome; Clay
640
556
-
Tyr
GTA
[ENA]
¢þ
>C181000790
AP014879
Gammaproteobacteria
Sulfuricaulis limicola HA5 [AP014879]
2358896
2358812
-
Tyr
GTA
-
¡û
>W1610663137
LJUK01000073
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
13907
13991
+
Tyr
GTA
[ENA]
¡û
>W1610663727
LJVB01000099
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
511
427
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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