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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288677 (1 seq.)
>C09100398
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1032891
1032816
-
His
GTG
[Ensembl]
¡û
Identical group No.317910 (9 seq.)
>W1711190275
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6463
6388
-
His
GTG
[ENA]
¡û
>W1711190314
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20134
20209
+
His
GTG
[ENA]
¡û
>W1711190418
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7804
7729
-
His
GTG
[ENA]
¡û
>W1711190546
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7836
7761
-
His
GTG
[ENA]
¡û
>W1711190594
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13973
13898
-
His
GTG
[ENA]
¡û
>W1711190655
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
15949
16024
+
His
GTG
[ENA]
¡û
>W1711293180
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7822
7747
-
His
GTG
[ENA]
¡û
>W141206803
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7733
7658
-
His
GTG
[ENA]
¡û
>W1710743656
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
22673
22748
+
His
GTG
[ENA]
¡û
Identical group No.319207 (6 seq.)
>W1711190366
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9214
9289
+
His
GTG
[ENA]
¡û
>W1711190508
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
1894
1969
+
His
GTG
[ENA]
¡û
>W1711190718
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
527
452
-
His
GTG
[ENA]
¡û
>W1711293127
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14771
14696
-
His
GTG
[ENA]
¡û
>W141206733
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131183
131258
+
His
GTG
[ENA]
¡û
>W141695562
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
22193
22118
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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