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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.82040 (4 seq.)
>W1710798740
LJTW01000135
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
5186
5274
+
Leu
TAA
[ENA]
¡û
>W1710799197
LJUK01000174
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
3088
3000
-
Leu
TAA
[ENA]
¡û
>W1610662697
LJTW01000135
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
5186
5274
+
Leu
TAA
[ENA]
¡û
>W1610663154
LJUK01000174
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
3088
3000
-
Leu
TAA
[ENA]
¡û
Identical group No.181025 (36 seq.)
>W1710777628
LJBT01000003
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
20613
20697
+
Leu
TAA
[ENA]
¡û
>W1711010496
LQRJ01000070
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
40595
40511
-
Leu
TAA
[ENA]
¡û
>W1711168329
LVXZ01000006
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
2653
2737
+
Leu
TAA
[ENA]
¡û
>W1711169872
LVZL01000039
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
1998
1914
-
Leu
TAA
[ENA]
¡û
>W1711220184
LXQG01000041
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
5533
5617
+
Leu
TAA
[ENA]
¡û
>W1711292981
LZYE01000260
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
980
896
-
Leu
TAA
[ENA]
¡û
>W1711293016
LZYF01000229
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
31725
31809
+
Leu
TAA
[ENA]
¡û
>W1711293047
LZYG01000067
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
12591
12507
-
Leu
TAA
[ENA]
¡û
>W1711293111
LZYH01000939
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
3618
3702
+
Leu
TAA
[ENA]
¡û
>W1711312152
MASQ01000059
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
15330
15414
+
Leu
TAA
[ENA]
¡û
>WENV181296035
OFHJ01004860
[OFHJ] soil metagenome; Clay
2963
3047
+
Leu
TAA
[ENA]
¢þ
>WENV181406380
OGCG01000176
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2933
2849
-
Leu
TAA
[ENA]
¢þ
>W141262932
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
1899
1815
-
Leu
TAA
[ENA]
¡û
>C08000432
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1577614
1577533
-
Leu
TAA
[Ensembl]
¡û
>WENV170008401
AOMP01001581
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
459
543
+
Leu
TAA
[ENA]
¢þ
>C181130838
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
788682
788598
-
Leu
TAA
-
¡û
>C191005121
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2818219
2818135
-
Leu
TAA
-
¡û
>W09134912
ACVD01000072
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
18185
18101
-
Leu
TAA
[ENA]
¡û
>W141738828
JNNH01000079
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
423
507
+
Leu
TAA
[ENA]
¡û
>C09100385
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1696507
1696423
-
Leu
TAA
[Ensembl]
¡û
>W1910831858
MXAV01000044
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
147066
146982
-
Leu
TAA
[ENA]
¡û
>W1810257109
PQJK01000001
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
294014
294098
+
Leu
TAA
[ENA]
¡û
>W1810679308
QKQP01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
2667
2751
+
Leu
TAA
[ENA]
¡û
>C151007976
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
873662
873578
-
Leu
TAA
[Ensembl]
¡û
>W10127958
AEFB01000072
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
342
426
+
Leu
TAA
[ENA]
¡û
>C11100517
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
896085
896001
-
Leu
TAA
[Ensembl]
¡û
>C11100750
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1602115
1602031
-
Leu
TAA
[Ensembl]
¡û
>W11135503
AEFB01000072
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
342
426
+
Leu
TAA
[ENA]
¡û
>W11164275
AFJD01000006
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
29958
29874
-
Leu
TAA
[ENA]
¡û
>W1610627881
LIEB01000001
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
20587
20671
+
Leu
TAA
[ENA]
¡û
>W1610641814
LJBT01000003
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
20613
20697
+
Leu
TAA
[ENA]
¡û
>W1610859016
LQRJ01000070
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
40595
40511
-
Leu
TAA
[ENA]
¡û
>W1610978244
LVXZ01000006
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
2653
2737
+
Leu
TAA
[ENA]
¡û
>W1611004656
LXQG01000041
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
5533
5617
+
Leu
TAA
[ENA]
¡û
>W1611057353
MASQ01000059
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
15330
15414
+
Leu
TAA
[ENA]
¡û
>W1710759008
LIEB01000001
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
20587
20671
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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