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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288706 (1 seq.)
>C09100402
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1029033
1028958
-
Val
TAC
[Ensembl]
¡û
Identical group No.307026 (1 seq.)
>W141262925
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
240551
240476
-
Val
TAC
[ENA]
¡û
Identical group No.319551 (6 seq.)
>W143004113
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
129378
129453
+
Val
TAC
[ENA]
¡û
>W143016596
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
23990
23915
-
Val
TAC
[ENA]
¡û
>W1730023186
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7409
7484
+
Val
TAC
[ENA]
¡û
>W1730023196
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
89
164
+
Val
TAC
[ENA]
¡û
>W1730023219
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
2332
2257
-
Val
TAC
[ENA]
¡û
>W1730025102
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
16576
16501
-
Val
TAC
[ENA]
¡û
Identical group No.368436 (2 seq.)
>W10127947
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1574
1499
-
Val
TAC
[ENA]
¡û
>W11135492
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1574
1499
-
Val
TAC
[ENA]
¡û
Identical group No.385992 (1 seq.)
>W131231763
AUIS01000004
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
62100
62175
+
Val
TAC
[ENA]
¡û
Identical group No.422421 (9 seq.)
>W1711190247
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14258
14184
-
Val
TAC
[ENA]
¡û
>W1711190322
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21422
21496
+
Val
TAC
[ENA]
¡û
>W1711190426
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6516
6442
-
Val
TAC
[ENA]
¡û
>W1711190554
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6548
6474
-
Val
TAC
[ENA]
¡û
>W1711190602
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12685
12611
-
Val
TAC
[ENA]
¡û
>W1711190663
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17237
17311
+
Val
TAC
[ENA]
¡û
>W1711293188
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6534
6460
-
Val
TAC
[ENA]
¡û
>W141206811
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6445
6371
-
Val
TAC
[ENA]
¡û
>W1710743664
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23961
24035
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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