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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119304 (1 seq.)
>C09100393
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033779
1033695
-
Leu
TAG
[Ensembl]
¡û
Identical group No.142829 (7 seq.)
>W1711190346
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7896
7979
+
Leu
TAG
[ENA]
¡û
>W1711190466
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
5278
5195
-
Leu
TAG
[ENA]
¡û
>W1711190529
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
11369
11452
+
Leu
TAG
[ENA]
¡û
>W1711190677
LWSD01000073
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16986
16903
-
Leu
TAG
[ENA]
¡û
>W1711293148
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
5296
5213
-
Leu
TAG
[ENA]
¡û
>W141206754
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
140658
140741
+
Leu
TAG
[ENA]
¡û
>W141695583
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
12388
12305
-
Leu
TAG
[ENA]
¡û
Identical group No.170168 (2 seq.)
>W10127969
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1160
1083
-
Leu
TAG
[ENA]
¡û
>W11135514
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1160
1083
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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