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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15359 (6 seq.)
>W1711190369
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9541
9632
+
Ile
TAT
[ENA]
¡û
>W1711190511
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
2221
2312
+
Ile
TAT
[ENA]
¡û
>W1711190721
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
200
109
-
Ile
TAT
[ENA]
¡û
>W1711293130
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14444
14353
-
Ile
TAT
[ENA]
¡û
>W141206736
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131510
131601
+
Ile
TAT
[ENA]
¡û
>W141695565
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
21866
21775
-
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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