This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TCC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463084 (1 seq.)
>C09100388
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1035325
1035250
-
Gly
TCC
[Ensembl]
¡û
Identical group No.809867 (1 seq.)
>W1711293101
LZYH01000631
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
1489
1562
+
Gly
TCC
[ENA]
¡û
Identical group No.819376 (2 seq.)
>W10127966
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1584
1511
-
Gly
TCC
[ENA]
¡û
>W11135511
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1584
1511
-
Gly
TCC
[ENA]
¡û
Identical group No.834131 (1 seq.)
>W141738813
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
10015
10088
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK