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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TGC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289059 (1 seq.)
>C09100389
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1035102
1035027
-
Ala
TGC
[Ensembl]
¡û
Identical group No.319208 (6 seq.)
>W1711190368
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9461
9536
+
Ala
TGC
[ENA]
¡û
>W1711190510
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
2141
2216
+
Ala
TGC
[ENA]
¡û
>W1711190720
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
280
205
-
Ala
TGC
[ENA]
¡û
>W1711293129
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14524
14449
-
Ala
TGC
[ENA]
¡û
>W141206735
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131430
131505
+
Ala
TGC
[ENA]
¡û
>W141695564
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
21946
21871
-
Ala
TGC
[ENA]
¡û
Identical group No.368450 (1 seq.)
>W11300862
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2545
2470
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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