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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458051 (11 seq.)
>W1711220197
LXQG01000062
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
90235
90160
-
Thr
TGT
[ENA]
¡û
>W1711292975
LZYE01000243
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
23353
23278
-
Thr
TGT
[ENA]
¡û
>W1711293025
LZYF01000281
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
23337
23262
-
Thr
TGT
[ENA]
¡û
>W1711293077
LZYG01000372
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
28736
28661
-
Thr
TGT
[ENA]
¡û
>W1711293097
LZYH01000546
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
984
909
-
Thr
TGT
[ENA]
¡û
>WENV181406391
OGCG01000199
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
25450
25375
-
Thr
TGT
[ENA]
¢þ
>C181130813
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
2116231
2116306
+
Thr
TGT
-
¡û
>W09134891
ACVD01000046
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
14082
14157
+
Thr
TGT
[ENA]
¡û
>C151007953
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
2160617
2160692
+
Thr
TGT
[Ensembl]
¡û
>C11100496
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
2317076
2317151
+
Thr
TGT
[Ensembl]
¡û
>W1611004669
LXQG01000062
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
90235
90160
-
Thr
TGT
[ENA]
¡û
Identical group No.490926 (7 seq.)
>W1711168355
LVXZ01000116
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
273
198
-
Thr
TGT
[ENA]
¡û
>W1711169866
LVZL01000019
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
19819
19744
-
Thr
TGT
[ENA]
¡û
>W141262952
CCCS020000057
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
48150
48075
-
Thr
TGT
[ENA]
¡û
>WENV170008367
AOMP01000558
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
2252
2177
-
Thr
TGT
[ENA]
¢þ
>C11100745
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
2234860
2234785
-
Thr
TGT
[Ensembl]
¡û
>W11164263
AFJD01000004
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
68063
68138
+
Thr
TGT
[ENA]
¡û
>W1610978270
LVXZ01000116
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
273
198
-
Thr
TGT
[ENA]
¡û
Identical group No.506149 (22 seq.)
>W1710777645
LJBT01000016
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
93394
93319
-
Thr
TGT
[ENA]
¡û
>W1711010466
LQRJ01000033
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
69230
69305
+
Thr
TGT
[ENA]
¡û
>W1711190260
LWRY01000094
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
4159
4084
-
Thr
TGT
[ENA]
¡û
>W1711190374
LWRZ01000220
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
1022
1097
+
Thr
TGT
[ENA]
¡û
>W1711190409
LWSA01000098
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
5296
5221
-
Thr
TGT
[ENA]
¡û
>W1711190539
LWSB01000178
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
1004
1079
+
Thr
TGT
[ENA]
¡û
>W1711190623
LWSC01000137
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
1011
1086
+
Thr
TGT
[ENA]
¡û
>W1711190675
LWSD01000060
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16208
16283
+
Thr
TGT
[ENA]
¡û
>W1711293168
LZYI01000074
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
5296
5221
-
Thr
TGT
[ENA]
¡û
>W1711312156
MASQ01000074
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4459
4384
-
Thr
TGT
[ENA]
¡û
>W1711585830
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1807872
1807797
-
Thr
TGT
[ENA]
¡û
>WENV181296179
OFHJ01012147
[OFHJ] soil metagenome; Clay
752
677
-
Thr
TGT
[ENA]
¢þ
>W141206792
AZMO01000053
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
38945
39020
+
Thr
TGT
[ENA]
¡û
>W141695600
JMEB01000227
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
5126
5201
+
Thr
TGT
[ENA]
¡û
>W1810679276
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
1056184
1056109
-
Thr
TGT
[ENA]
¡û
>W11168524
AFOH01000037
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
22037
22112
+
Thr
TGT
[ENA]
¡û
>W1610627885
LIEB01000007
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
69271
69346
+
Thr
TGT
[ENA]
¡û
>W1610641831
LJBT01000016
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
93394
93319
-
Thr
TGT
[ENA]
¡û
>W1610858986
LQRJ01000033
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
69230
69305
+
Thr
TGT
[ENA]
¡û
>W1611057357
MASQ01000074
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4459
4384
-
Thr
TGT
[ENA]
¡û
>W1710743686
LGYM01000026
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
128256
128331
+
Thr
TGT
[ENA]
¡û
>W1710759012
LIEB01000007
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
69271
69346
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK